HHsearch alignment of GI: 254780939 and MMDB domain: 2fjr_A_71-189

>2fjr_A (A:71-189) Repressor protein CI; genetic switch, regulation, cooperativity, transcription regulator; 1.95A {Enterobacteria phage 186} PDB: 2fkd_A
Probab=97.74  E-value=1.5e-05  Score=54.36  Aligned_cols=55  Identities=16%  Similarity=0.156  Sum_probs=45.8

Q ss_pred             EEECCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHEEEEEEEECHHHEEE
Q ss_conf             99878667764336988999840058766412211542222112555334704664014420031000000304234320
Q gi|254780939|r   38 SVIPSGSMIPTLLVGDYIIVNKFSYGYSKYSFPFSYNLFNGRIFNNQPRRGDVVVFRYPKDPSIDYVKRVIGLPGDRISL  117 (248)
Q Consensus        38 f~Ips~SM~PTL~~GD~i~VnK~~YG~~~~~~p~~~~~~~~~i~~~~p~RGDIVVF~~P~d~~~~yVKRvIGlPGDtV~i  117 (248)
                      ++|.+.||+|++..||.++|++-                      .+++-|++|+-.    .+..++||+.-.||+++.+
T Consensus        38 l~v~GdSM~p~i~~Gd~viVd~~----------------------~~~~~g~~vi~~----~~~~~ikr~~~~~~~~i~l   91 (119)
T 2fjr_A           38 FTKPLTDGMAIRSEGKIYFVDKQ----------------------ASLSDGLWLVDI----KGAISIRELTKLPGRKLHV   91 (119)
T ss_dssp             CSSCCSSEEEEEETTEEEEEETT----------------------CCSCSEEEEEEE----TTEEEEEEEEEETTTEEEE
T ss_pred             EECCCCCCCCEECCCCEEEECCC----------------------CCCCCCEEEEEC----CCEEEEEEEEECCCCEEEE
T ss_conf             77268887427479999999399----------------------722585799981----6817999999848986999


Q ss_pred             C
Q ss_conf             0
Q gi|254780939|r  118 E  118 (248)
Q Consensus       118 ~  118 (248)
                      .
T Consensus        92 ~   92 (119)
T 2fjr_A           92 A   92 (119)
T ss_dssp             E
T ss_pred             E
T ss_conf             6