Query gi|254780939|ref|YP_003065352.1| type I signal peptidase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 248
No_of_seqs 132 out of 2445
Neff 6.6
Searched_HMMs 23785
Date Tue May 31 23:35:49 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780939.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1b12_A Signal peptidase I; ser 100.0 0 0 387.7 12.6 204 30-247 1-247 (248)
2 1jhf_A LEXA repressor; LEXA SO 97.1 0.00049 2E-08 43.9 4.8 47 38-109 113-160 (202)
3 2hnf_A Repressor protein CI101 97.0 0.0011 4.6E-08 41.6 5.8 50 37-110 46-101 (133)
4 1kca_A Repressor protein CI; g 96.9 0.0017 7E-08 40.5 6.2 48 38-109 16-69 (109)
5 3k2z_A LEXA repressor; winged 96.9 0.0013 5.4E-08 41.2 5.5 49 37-110 111-160 (196)
6 1umu_A UMUD'; induced mutagene 96.8 0.0014 5.9E-08 41.0 4.9 45 38-107 30-75 (116)
7 3bdn_A Lambda repressor; repre 96.2 0.007 2.9E-07 36.6 5.1 48 37-108 142-195 (236)
8 2fjr_A Repressor protein CI; g 95.2 0.015 6.4E-07 34.5 3.8 52 40-117 110-161 (189)
9 2pp6_A Gifsy-2 prophage ATP-bi 72.4 1.8 7.4E-05 21.5 2.4 20 84-107 63-82 (102)
10 2jyx_A Lipoprotein SPR; soluti 60.2 3.5 0.00015 19.6 1.9 34 62-95 45-78 (136)
11 3gt2_A Putative uncharacterize 42.4 9 0.00038 17.0 1.6 33 63-95 68-100 (142)
12 3ne0_A Resuscitation promoting 39.8 9.6 0.0004 16.8 1.5 19 77-95 151-169 (214)
13 1hr0_W Translation initiation 39.0 15 0.00064 15.6 2.4 11 49-59 47-57 (71)
14 1y71_A Kinase-associated prote 36.5 9.8 0.00041 16.8 1.1 17 42-58 1-17 (130)
15 3i86_A Putative uncharacterize 35.3 13 0.00055 16.0 1.6 32 63-94 64-95 (141)
16 1zvp_A Hypothetical protein VC 34.1 13 0.00055 16.0 1.4 16 43-58 13-28 (133)
17 3a2z_A Bifunctional glutathion 33.2 21 0.00088 14.7 4.5 35 83-117 110-145 (197)
18 1dj7_B Ferredoxin thioredoxin 27.9 26 0.0011 14.1 2.3 28 89-118 12-39 (75)
19 2d3j_A WNT inhibitory factor-1 26.5 13 0.00056 15.9 0.4 36 83-123 5-40 (157)
20 2kie_A Inositol polyphosphate 25.9 20 0.00086 14.8 1.2 17 41-57 2-18 (124)
21 3o4v_A MTA/SAH nucleosidase; m 23.6 29 0.0012 13.8 1.7 21 42-62 79-99 (234)
22 1ub4_A MAZF protein; toxin, an 22.6 30 0.0013 13.7 1.6 13 84-96 5-17 (110)
23 2waq_A DNA-directed RNA polyme 22.5 33 0.0014 13.5 3.6 35 82-118 408-446 (880)
24 2z0s_A Probable exosome comple 22.1 33 0.0014 13.5 3.1 13 182-194 185-197 (235)
25 3bga_A Beta-galactosidase; NYS 21.8 27 0.0012 14.0 1.2 16 114-129 337-352 (1010)
26 2p1g_A Putative xylanase; stru 20.6 36 0.0015 13.3 3.5 39 181-224 172-210 (249)
27 2bkf_A Zinc-finger protein NBR 20.1 33 0.0014 13.5 1.3 32 87-118 14-51 (87)
No 1
>1b12_A Signal peptidase I; serine proteinase, serine-dependant hydrolase, signal peptide processing, protein translocation; HET: 1PN; 1.95A {Escherichia coli BL21} SCOP: b.87.1.2 PDB: 1t7d_A* 3iiq_A* 1kn9_A*
Probab=100.00 E-value=0 Score=387.68 Aligned_cols=204 Identities=39% Similarity=0.723 Sum_probs=148.1
Q ss_pred HHHEEEEEEEECCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHEEEEEEE
Q ss_conf 87516898998786677643369889998400587664122115422221125553347046640144200310000003
Q gi|254780939|r 30 IRTFLFQPSVIPSGSMIPTLLVGDYIIVNKFSYGYSKYSFPFSYNLFNGRIFNNQPRRGDVVVFRYPKDPSIDYVKRVIG 109 (248)
Q Consensus 30 ir~fv~~~f~Ips~SM~PTL~~GD~i~VnK~~YG~~~~~~p~~~~~~~~~i~~~~p~RGDIVVF~~P~d~~~~yVKRvIG 109 (248)
||+|++|+|+|||+||+|||+.||+|||||++||+|.|..... .+....|+|||||||++|.+++..|||||||
T Consensus 1 Ir~fv~~~f~IPs~SMePTL~~GD~l~V~K~~Yg~r~P~~~~~------i~~~~~~~~gdivvf~~p~~~~~~~vKR~ig 74 (248)
T 1b12_A 1 VRSFIYEPFQIPSGSMMPTLLIGDFILVEKFAYGIKDPIYQKT------LIETGHPKRGDIVVFKYPEDPKLDYIKRAVG 74 (248)
T ss_dssp -CBCCEEEEECCSCTTTTTSCTTEEEEEEESEEEEECGGGSCE------EEEECCCCTTCEEEEECTTCTTSEEEEEEEE
T ss_pred CEEEEEEEEEECCCCCHHHHCCCCEEEEEECCCCCCCCCCCCE------EEECCCCCCCCEEEECCCCCCCCCEEECCCC
T ss_conf 9499999689286036203206999999934258677875866------4004898528999986788888652223567
Q ss_pred ECHHHEEECCC--CEEECCCCCCCCCCCCCEEEC-----------------CCC---------------CCEEEEEECCC
Q ss_conf 04234320077--324535312245446400221-----------------478---------------62012210221
Q gi|254780939|r 110 LPGDRISLEKG--IIYINGAPVVRHMEGYFSYHY-----------------KED---------------WSSNVPIFQEK 155 (248)
Q Consensus 110 lPGDtV~i~~~--~l~INg~~i~~~~~~~~~~~~-----------------~~~---------------~~~~~~~~~e~ 155 (248)
+|||+|++++. .+++|+............... ... .........|+
T Consensus 75 ~pGD~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (248)
T 1b12_A 75 LPGDKVTYDPVSKELTIQPGCSSGQACENALPVTYSNVEPSDFVQTFSRRNGGEATSGFFEVPKNETKENGIRLSERKET 154 (248)
T ss_dssp CTTCEEEEETTTTEEEEETTCCSSCCCCCCCCEEECCCEEEEEEEEEECGGGSCEEEEEEECCTTCCCTTEEEEEEEEEE
T ss_pred CCCCEEEEECCCCEEEECCCCCCCEEEECCEEEECCCCCCCHHHHEECCCCCCCCCCCEEECCCCCCCCCCEEEEEEEEC
T ss_conf 89877787446531786225556636523255202434741211000002676124530431455435575683023321
Q ss_pred CCCCCCCCEE---------ECCCCCCCCCCCEEECCCCEEEEEECCCCCCCCCCCCCCCCCCHHHEEEEEEEEEEECCCC
Q ss_conf 4678500022---------1245578874530232446499971788777644536530260888253389999743788
Q gi|254780939|r 156 LSNGVLYNVL---------SQDFLAPSSNISEFLVPKGHYFMMGDNRDKSKDSRWVEVGFVPEENLVGRASFVLFSIGGD 226 (248)
Q Consensus 156 l~~~~~~~~~---------~~~~~~~~~~~~~~~VP~g~yfvlGDNRdnS~DSR~~~~G~Vp~~~IvGka~~i~~S~d~~ 226 (248)
+++ ..+..+ ......+.++.++++||+||||||||||+||+|||| ||+||+++|+|||+++|||+|..
T Consensus 155 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vp~~~yfvmGDNR~nS~DSR~--~G~Vp~~~I~Gka~~i~~p~~~~ 231 (248)
T 1b12_A 155 LGD-VTHRILTVPIAQDQVGMYYQQPGQQLATWIVPPGQYFMMGDNRDNSADSRY--WGFVPEANLVGRATAIWMSFDKQ 231 (248)
T ss_dssp ETT-EEEEEEECTTCCCCGGGSCCCTTCCTTEEECCTTEEEEECSBTTSCCCHHH--HCCEEGGGEEEEEEEEEEEBC--
T ss_pred CCC-CEEEEEECCCCCCCCCCCCCCCCCCCCEEEECCCEEEEECCCCCCCCCCCC--CCCCCHHHEEEEEEEEEEECCCC
T ss_conf 587-202566414420011100037765452089628849997179886640155--57776899588889999988887
Q ss_pred CCCCCCCCCCCCCCHHHCCCC
Q ss_conf 775435554567013342232
Q gi|254780939|r 227 TPFSKVWLWIPNMRWDRLFKI 247 (248)
Q Consensus 227 ~~~~~~~~~~~~iRw~R~f~~ 247 (248)
.. .|+.++||+||++.
T Consensus 232 ~~-----~~~~~~R~~Rig~i 247 (248)
T 1b12_A 232 EG-----EWPTGLRLSRIGGI 247 (248)
T ss_dssp -----------CBCGGGCBCC
T ss_pred CC-----CCCCCCCCCCCCCC
T ss_conf 68-----68777663016127
No 2
>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.2 b.87.1.1 PDB: 1jhh_A 1jhc_A 1jhe_A 1lea_A 1leb_A
Probab=97.12 E-value=0.00049 Score=43.88 Aligned_cols=47 Identities=34% Similarity=0.367 Sum_probs=37.5
Q ss_pred EEECCCCCCCC-CCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHEEEEEEE
Q ss_conf 99878667764-3369889998400587664122115422221125553347046640144200310000003
Q gi|254780939|r 38 SVIPSGSMIPT-LLVGDYIIVNKFSYGYSKYSFPFSYNLFNGRIFNNQPRRGDVVVFRYPKDPSIDYVKRVIG 109 (248)
Q Consensus 38 f~Ips~SM~PT-L~~GD~i~VnK~~YG~~~~~~p~~~~~~~~~i~~~~p~RGDIVVF~~P~d~~~~yVKRvIG 109 (248)
++|.++||+|+ +..||.|+|.+- .+++-|||||+.. +. ...+||+.=
T Consensus 113 l~V~GdSM~~~gI~~GDiviv~~~----------------------~~~~~GdIvv~~~--~~-e~t~Kr~~~ 160 (202)
T 1jhf_A 113 LRVSGMSMKDIGIMDGDLLAVHKT----------------------QDVRNGQVVVARI--DD-EVTVKRLKK 160 (202)
T ss_dssp EECCSSTTGGGTCCTTCEEEEEEC----------------------SCCCTTSEEEEEE--TT-EEEEEEEEE
T ss_pred EEECCCCCCCCCCCCCCEEEEECC----------------------CCCCCCCEEEEEE--CC-EEEEEEEEE
T ss_conf 998797675631479839999724----------------------4323797899998--99-578999999
No 3
>2hnf_A Repressor protein CI101-229DM-K192A; viral protein; 1.80A {Escherichia coli} PDB: 2ho0_A 1f39_A
Probab=97.01 E-value=0.0011 Score=41.64 Aligned_cols=50 Identities=18% Similarity=0.107 Sum_probs=38.1
Q ss_pred EEEECCCCC------CCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHEEEEEEEE
Q ss_conf 899878667------76433698899984005876641221154222211255533470466401442003100000030
Q gi|254780939|r 37 PSVIPSGSM------IPTLLVGDYIIVNKFSYGYSKYSFPFSYNLFNGRIFNNQPRRGDVVVFRYPKDPSIDYVKRVIGL 110 (248)
Q Consensus 37 ~f~Ips~SM------~PTL~~GD~i~VnK~~YG~~~~~~p~~~~~~~~~i~~~~p~RGDIVVF~~P~d~~~~yVKRvIGl 110 (248)
+++|.++|| +|++..||.|+|++- .+++.||+||..... ....+||+.--
T Consensus 46 al~V~GdSM~~~~~~ep~i~~GdiviVd~~----------------------~~~~~g~~vva~~~~--~~~~~k~~~~~ 101 (133)
T 2hnf_A 46 WLEVEGNSMTTPTGSKTSFPDGMLILVDPE----------------------QAVEPGDFCIARLGG--DEFTFAKLIRD 101 (133)
T ss_dssp EEECCSSTTCCC---CCCCCTTCEEEEETT----------------------SCCCTTSEEEEEETT--TEEEEEEEEEE
T ss_pred EEEEECCCCCCCCCCCCCCCCCCEEEEECC----------------------CCCCCCCEEEEEECC--CCEEEEEEEEE
T ss_conf 999847723576566885489999999714----------------------634658869999946--87699999984
No 4
>1kca_A Repressor protein CI; gene regulation, DNA-binding, lambda repressor, protein oligomerization, DNA-looping; 2.91A {Enterobacteria phage lambda} SCOP: b.87.1.1
Probab=96.95 E-value=0.0017 Score=40.51 Aligned_cols=48 Identities=23% Similarity=0.283 Sum_probs=36.8
Q ss_pred EEECCCCC------CCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHEEEEEEE
Q ss_conf 99878667------7643369889998400587664122115422221125553347046640144200310000003
Q gi|254780939|r 38 SVIPSGSM------IPTLLVGDYIIVNKFSYGYSKYSFPFSYNLFNGRIFNNQPRRGDVVVFRYPKDPSIDYVKRVIG 109 (248)
Q Consensus 38 f~Ips~SM------~PTL~~GD~i~VnK~~YG~~~~~~p~~~~~~~~~i~~~~p~RGDIVVF~~P~d~~~~yVKRvIG 109 (248)
.+|.++|| +|++..||.|+|++ ..+|+-||+|+..-.. ....+||+.-
T Consensus 16 l~V~GdSM~~~~g~ep~i~~GdiviVd~----------------------~~~~~~G~ivva~~~~--~~~~~Krl~~ 69 (109)
T 1kca_A 16 LEVEGNSMTAPTGSKPSFPDGMLILVDP----------------------EQAVEPGDFCIARLGG--DEFTFKKLIR 69 (109)
T ss_dssp EECCSSTTCCCTTCSSCCCTTCEEEEET----------------------TSCCCTTCEEEEECST--TCEEEEEEEE
T ss_pred EEEECCCCCCCCCCCCCCCCCCEEEEEC----------------------CCCCCCCCEEEEEECC--CEEEEEEEEE
T ss_conf 9997866788866789639999999982----------------------5866789999999969--9999999999
No 5
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=96.92 E-value=0.0013 Score=41.23 Aligned_cols=49 Identities=18% Similarity=0.221 Sum_probs=37.9
Q ss_pred EEEECCCCCCCC-CCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHEEEEEEEE
Q ss_conf 899878667764-33698899984005876641221154222211255533470466401442003100000030
Q gi|254780939|r 37 PSVIPSGSMIPT-LLVGDYIIVNKFSYGYSKYSFPFSYNLFNGRIFNNQPRRGDVVVFRYPKDPSIDYVKRVIGL 110 (248)
Q Consensus 37 ~f~Ips~SM~PT-L~~GD~i~VnK~~YG~~~~~~p~~~~~~~~~i~~~~p~RGDIVVF~~P~d~~~~yVKRvIGl 110 (248)
..+|.++||.|+ +..||.|+|++- .+++.|||||+... +...+||+.-.
T Consensus 111 ~l~V~GdSM~~~~i~~gd~viv~~~----------------------~~~~~g~ivv~~~~---~e~t~Kr~~~~ 160 (196)
T 3k2z_A 111 LLKVKGESMIEEHICDGDLVLVRRQ----------------------DWAQNGDIVAAMVD---GEVTLAKFYQR 160 (196)
T ss_dssp EEECCSSTTGGGTCCTTCEEEEEEC----------------------SCCCTTCEEEEEET---TEEEEEEEEEE
T ss_pred EEEEECCEEEEEECCCCCEEEEEEC----------------------CCCCCCCEEEEEEC---CEEEEEEEEEE
T ss_conf 9999388953454279958999702----------------------55436979999975---74538899998
No 6
>1umu_A UMUD'; induced mutagenesis, SOS mutagenesis, DNA repair, beta- lactamase cleavage reaction, LEXA repressor, lambda CI; 2.50A {Escherichia coli} SCOP: b.87.1.1 PDB: 1i4v_A 1ay9_A
Probab=96.81 E-value=0.0014 Score=40.99 Aligned_cols=45 Identities=24% Similarity=0.248 Sum_probs=36.5
Q ss_pred EEECCCCC-CCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHEEEEE
Q ss_conf 99878667-76433698899984005876641221154222211255533470466401442003100000
Q gi|254780939|r 38 SVIPSGSM-IPTLLVGDYIIVNKFSYGYSKYSFPFSYNLFNGRIFNNQPRRGDVVVFRYPKDPSIDYVKRV 107 (248)
Q Consensus 38 f~Ips~SM-~PTL~~GD~i~VnK~~YG~~~~~~p~~~~~~~~~i~~~~p~RGDIVVF~~P~d~~~~yVKRv 107 (248)
.+|.++|| ++.+..||.|+|.|- .+|+-|||||+..- +...|||.
T Consensus 30 lrV~GdSM~~~~I~~gD~liv~~~----------------------~~~~~g~ivv~~i~---ge~tvKrl 75 (116)
T 1umu_A 30 VKASGDSMIDGGISDGDLLIVDSA----------------------ITASHGDIVIAAVD---GEFTVKKL 75 (116)
T ss_dssp EECCSSTTGGGTCCTTCEEEEETT----------------------SCCCTTCEEEEEET---TEEEEEEE
T ss_pred EEEECCCCCCCCCCCCCEEEEECC----------------------CCCCCCCEEEEEEC---CEEEEEEE
T ss_conf 999288856686689989998636----------------------78641759999978---88999999
No 7
>3bdn_A Lambda repressor; repressor, allostery; HET: DNA; 3.91A {Enterobacteria phage lambda}
Probab=96.16 E-value=0.007 Score=36.60 Aligned_cols=48 Identities=23% Similarity=0.223 Sum_probs=31.7
Q ss_pred EEEECCCCC------CCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHEEEEEE
Q ss_conf 899878667------764336988999840058766412211542222112555334704664014420031000000
Q gi|254780939|r 37 PSVIPSGSM------IPTLLVGDYIIVNKFSYGYSKYSFPFSYNLFNGRIFNNQPRRGDVVVFRYPKDPSIDYVKRVI 108 (248)
Q Consensus 37 ~f~Ips~SM------~PTL~~GD~i~VnK~~YG~~~~~~p~~~~~~~~~i~~~~p~RGDIVVF~~P~d~~~~yVKRvI 108 (248)
.+.|.+.|| +|++..||.++|++- ..+..||+|++.... +..+|||+.
T Consensus 142 ~l~v~GdsM~~~~~~ep~i~~Gd~v~vd~~----------------------~~~~~~~~v~v~~~~--~~~~iKrl~ 195 (236)
T 3bdn_A 142 WLEVEGNSMTAPTGSKPSFPDGMLILVDPE----------------------QAVEPGDFCIARLGG--DEFTFKKLI 195 (236)
T ss_dssp EEECCSSSSCCCSSCSSCCCSSCEEEECCS----------------------SCCCTTSEEEEESTT--TCCCCEEEE
T ss_pred EEEEECCCCCCCCCCCCEEECCEEEEEECC----------------------CCCCCCCEEEEEECC--CEEEEEEEE
T ss_conf 999962205777788988868806876145----------------------432138789999869--999999999
No 8
>2fjr_A Repressor protein CI; genetic switch, regulation, cooperativity, transcription regulator; 1.95A {Enterobacteria phage 186} PDB: 2fkd_A
Probab=95.18 E-value=0.015 Score=34.47 Aligned_cols=52 Identities=15% Similarity=0.236 Sum_probs=32.5
Q ss_pred ECCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHEEEEEEEECHHHEEE
Q ss_conf 878667764336988999840058766412211542222112555334704664014420031000000304234320
Q gi|254780939|r 40 IPSGSMIPTLLVGDYIIVNKFSYGYSKYSFPFSYNLFNGRIFNNQPRRGDVVVFRYPKDPSIDYVKRVIGLPGDRISL 117 (248)
Q Consensus 40 Ips~SM~PTL~~GD~i~VnK~~YG~~~~~~p~~~~~~~~~i~~~~p~RGDIVVF~~P~d~~~~yVKRvIGlPGDtV~i 117 (248)
+...||+|++..||.++|++- ....-| +.++.. .+..+|||+.-+||-.+.+
T Consensus 110 ~~g~sm~p~~~~Gd~v~vd~~----------------------~~~~dG-iyvi~~---~g~~~iKrl~~~p~g~i~~ 161 (189)
T 2fjr_A 110 KPLTDGMAIRSEGKIYFVDKQ----------------------ASLSDG-LWLVDI---KGAISIRELTKLPGRKLHV 161 (189)
T ss_dssp SCCSSEEEEEETTEEEEEETT----------------------CCSCSE-EEEEEE---TTEEEEEEEEEETTTEEEE
T ss_pred ECCCCCCCEECCCCEEEEECC----------------------CCCCCC-EEEEEE---CCCEEEEEEEECCCCEEEE
T ss_conf 179877768579949999299----------------------844498-899981---7928899999858986999
No 9
>2pp6_A Gifsy-2 prophage ATP-binding sugar transporter- like protein; beta barrel, 4 helix bundle, structural genomics, PSI-2; 2.70A {Salmonella typhimurium LT2} SCOP: b.106.1.2
Probab=72.44 E-value=1.8 Score=21.47 Aligned_cols=20 Identities=55% Similarity=0.679 Sum_probs=15.1
Q ss_pred CCCCCCEEEEECCCCCHHHEEEEE
Q ss_conf 533470466401442003100000
Q gi|254780939|r 84 QPRRGDVVVFRYPKDPSIDYVKRV 107 (248)
Q Consensus 84 ~p~RGDIVVF~~P~d~~~~yVKRv 107 (248)
+|+|||.||+. .+.+.|+|-
T Consensus 63 kPrr~D~Vv~~----Gk~y~Vtr~ 82 (102)
T 2pp6_A 63 IPRRGDRVVLR----GSEFTVTRI 82 (102)
T ss_dssp CCCTTCEEEET----TEEEEEEEE
T ss_pred CCCCCCEEEEC----CCEEEEEEE
T ss_conf 46889878974----868999889
No 10
>2jyx_A Lipoprotein SPR; solution structure, construct optimized, membrane, palmitate, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli K12} PDB: 2k1g_A
Probab=60.22 E-value=3.5 Score=19.63 Aligned_cols=34 Identities=21% Similarity=0.376 Sum_probs=19.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEC
Q ss_conf 5876641221154222211255533470466401
Q gi|254780939|r 62 YGYSKYSFPFSYNLFNGRIFNNQPRRGDVVVFRY 95 (248)
Q Consensus 62 YG~~~~~~p~~~~~~~~~i~~~~p~RGDIVVF~~ 95 (248)
+|...|+...........+...++|.||+|.|+.
T Consensus 45 ~Gi~lpr~t~~q~~~g~~v~~~~~~pGDlvff~~ 78 (136)
T 2jyx_A 45 FGLELPRSTYEQQEMGKSVSRSNLRTGDLVLFRA 78 (136)
T ss_dssp TCCCCCSSHHHHGGGSEECCTTTCCTTEEEEEEC
T ss_pred CCCCCCCCHHHHHHCCEEEEECCCCCCCEEEECC
T ss_conf 6979998879996388187115689998999798
No 11
>3gt2_A Putative uncharacterized protein; P60 domain, antigen, unknown function; HET: EDO; 1.75A {Mycobacterium avium subsp}
Probab=42.41 E-value=9 Score=17.04 Aligned_cols=33 Identities=18% Similarity=0.264 Sum_probs=19.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEC
Q ss_conf 876641221154222211255533470466401
Q gi|254780939|r 63 GYSKYSFPFSYNLFNGRIFNNQPRRGDVVVFRY 95 (248)
Q Consensus 63 G~~~~~~p~~~~~~~~~i~~~~p~RGDIVVF~~ 95 (248)
|..+|+..........++...+.|.||+|.|+.
T Consensus 68 G~~lpr~s~~q~~~g~~v~~~~~~pGDLvff~~ 100 (142)
T 3gt2_A 68 GIKLPRSSGAMYRVGQKILPQQARKGDLIFYGP 100 (142)
T ss_dssp TCCCCSSHHHHTTSSEEECGGGCCTTCEEEESG
T ss_pred CCCCCCCHHHHHHHHCCCCCCCCCCCEEEEECC
T ss_conf 998996659998642033445799981899569
No 12
>3ne0_A Resuscitation promoting factor interacting protei; cell WALL, peptidoglycan, hydrolase; 1.00A {Mycobacterium tuberculosis} PDB: 2xiv_A*
Probab=39.80 E-value=9.6 Score=16.84 Aligned_cols=19 Identities=37% Similarity=0.574 Sum_probs=12.3
Q ss_pred CCCCCCCCCCCCCEEEEEC
Q ss_conf 2211255533470466401
Q gi|254780939|r 77 NGRIFNNQPRRGDVVVFRY 95 (248)
Q Consensus 77 ~~~i~~~~p~RGDIVVF~~ 95 (248)
..++...++|.||+|.|..
T Consensus 151 g~~~~~~~~~pGDLvff~~ 169 (214)
T 3ne0_A 151 GRKIPSSQMRRGDVIFYGP 169 (214)
T ss_dssp SEEEEGGGCCTTCEEEESG
T ss_pred CEEEECCCCCCCEEEEECC
T ss_conf 7021327899971899569
No 13
>1hr0_W Translation initiation factor; ribosomal subunit, ribosome, IF1; 3.20A {Escherichia coli} SCOP: b.40.4.5 PDB: 1zo1_W
Probab=39.00 E-value=15 Score=15.60 Aligned_cols=11 Identities=36% Similarity=0.694 Sum_probs=4.3
Q ss_pred CCCCCEEEEEC
Q ss_conf 33698899984
Q gi|254780939|r 49 LLVGDYIIVNK 59 (248)
Q Consensus 49 L~~GD~i~VnK 59 (248)
+..||.|+|.-
T Consensus 47 I~~GD~V~Vel 57 (71)
T 1hr0_W 47 ILPGDRVVVEI 57 (71)
T ss_dssp CCTTCEEEEEC
T ss_pred ECCCCEEEEEE
T ss_conf 36999999996
No 14
>1y71_A Kinase-associated protein B; structural genomics, midwest center for structural genomics, MCSG, protein structure initiative, PSI; 1.95A {Bacillus cereus} SCOP: b.34.16.1
Probab=36.50 E-value=9.8 Score=16.79 Aligned_cols=17 Identities=24% Similarity=0.294 Sum_probs=14.0
Q ss_pred CCCCCCCCCCCCEEEEE
Q ss_conf 86677643369889998
Q gi|254780939|r 42 SGSMIPTLLVGDYIIVN 58 (248)
Q Consensus 42 s~SM~PTL~~GD~i~Vn 58 (248)
|+.|..|+.+||.+-+.
T Consensus 1 ~~~~~~tf~~G~~V~~~ 17 (130)
T 1y71_A 1 SNAMRETFEIGEIVTGI 17 (130)
T ss_dssp ------CCCTTCEEEEE
T ss_pred CCHHHCCCCCCCEEEEE
T ss_conf 92454324078589999
No 15
>3i86_A Putative uncharacterized protein; alpha and beta protein, hypothetical cysteine protease, HYDR; 2.40A {Mycobacterium avium subsp}
Probab=35.35 E-value=13 Score=15.99 Aligned_cols=32 Identities=25% Similarity=0.295 Sum_probs=17.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf 87664122115422221125553347046640
Q gi|254780939|r 63 GYSKYSFPFSYNLFNGRIFNNQPRRGDVVVFR 94 (248)
Q Consensus 63 G~~~~~~p~~~~~~~~~i~~~~p~RGDIVVF~ 94 (248)
|..+|+..........++...+.|.||+|.|.
T Consensus 64 Gi~lpr~t~~q~~~g~~v~~~~~~pGDLvff~ 95 (141)
T 3i86_A 64 GVLIPRFSGDQYNAGRHIPQDQARRGDLIFYG 95 (141)
T ss_dssp TCCCCSSHHHHTTSSEEEEGGGCCTTCEEEES
T ss_pred CCCCCCCHHHHHHCCCEECCCCCCCCCEEEEC
T ss_conf 99999872999835823221558998689975
No 16
>1zvp_A Hypothetical protein VC0802; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Vibrio cholerae} SCOP: d.58.18.9 d.58.18.9
Probab=34.11 E-value=13 Score=16.02 Aligned_cols=16 Identities=44% Similarity=0.870 Sum_probs=14.5
Q ss_pred CCCCCCCCCCCEEEEE
Q ss_conf 6677643369889998
Q gi|254780939|r 43 GSMIPTLLVGDYIIVN 58 (248)
Q Consensus 43 ~SM~PTL~~GD~i~Vn 58 (248)
.+|+|.|+.|+|+|+.
T Consensus 13 ~~m~p~L~~g~yvf~~ 28 (133)
T 1zvp_A 13 QSMSPELMAGDYVFCT 28 (133)
T ss_dssp HTCEEEECSSCEEEEE
T ss_pred HCCCEEECCCCEEEEE
T ss_conf 5099888898489999
No 17
>3a2z_A Bifunctional glutathionylspermidine synthetase/AM; GSP amidase, ATP-binding, hydrolase, ligase, multifunctional nucleotide-binding; 1.50A {Escherichia coli} PDB: 3a30_A 3a2y_A*
Probab=33.22 E-value=21 Score=14.70 Aligned_cols=35 Identities=14% Similarity=0.323 Sum_probs=19.5
Q ss_pred CCCCCCCEEEEECC-CCCHHHEEEEEEEECHHHEEE
Q ss_conf 55334704664014-420031000000304234320
Q gi|254780939|r 83 NQPRRGDVVVFRYP-KDPSIDYVKRVIGLPGDRISL 117 (248)
Q Consensus 83 ~~p~RGDIVVF~~P-~d~~~~yVKRvIGlPGDtV~i 117 (248)
..|+.|||+|+..- .....-=|-=|+.+-+++|.+
T Consensus 110 ~~P~~GDilVw~~~~~~~p~GHVAiV~~v~~~~v~i 145 (197)
T 3a2z_A 110 RAPVAGALLIWDKGGEFKDTGHVAIITQLHGNKVRI 145 (197)
T ss_dssp SCCCTTCEEEECSCGGGTTTCEEEEEEEECSSEEEE
T ss_pred CCCCCCCEEEECCCCCCCCCEEEEEEEEECCCEEEE
T ss_conf 899998899977888889845899999837987999
No 18
>1dj7_B Ferredoxin thioredoxin reductase: variable chain; 4Fe-4S cluster binding fold with CXCX16CXCX8CXC binding motif, electron transport; 1.60A {Synechocystis SP} SCOP: b.34.4.3 PDB: 2pu9_B 2pvo_B 2puo_B 2puk_B 2pvd_B 2pvg_B
Probab=27.89 E-value=26 Score=14.13 Aligned_cols=28 Identities=21% Similarity=0.503 Sum_probs=19.4
Q ss_pred CEEEEECCCCCHHHEEEEEEEECHHHEEEC
Q ss_conf 046640144200310000003042343200
Q gi|254780939|r 89 DVVVFRYPKDPSIDYVKRVIGLPGDRISLE 118 (248)
Q Consensus 89 DIVVF~~P~d~~~~yVKRvIGlPGDtV~i~ 118 (248)
-++||++|+.....| -+-|+.|+..++-
T Consensus 12 sv~VyhhP~hr~~~f--Dl~G~eGeV~~~v 39 (75)
T 1dj7_B 12 SVVVYHHPEHKKTAF--DLQGMEGEVAAVL 39 (75)
T ss_dssp CCEESCCTTSTTSCE--ECTTCEEEEEEEC
T ss_pred EEEEEECCCCCCCCC--CCCCCEEEEEEEE
T ss_conf 189984876579884--5688777776787
No 19
>2d3j_A WNT inhibitory factor-1; palmitoyl group, recognition domain, signaling protein inhibitor; NMR {Homo sapiens}
Probab=26.55 E-value=13 Score=15.95 Aligned_cols=36 Identities=11% Similarity=0.220 Sum_probs=28.8
Q ss_pred CCCCCCCEEEEECCCCCHHHEEEEEEEECHHHEEECCCCEE
Q ss_conf 55334704664014420031000000304234320077324
Q gi|254780939|r 83 NQPRRGDVVVFRYPKDPSIDYVKRVIGLPGDRISLEKGIIY 123 (248)
Q Consensus 83 ~~p~RGDIVVF~~P~d~~~~yVKRvIGlPGDtV~i~~~~l~ 123 (248)
.+++++++=+|-. +.+ |||.+|+..|-..++||.+.
T Consensus 5 ~~~~~~~l~L~i~---~~q--v~~l~Gl~aELyyVrnG~vn 40 (157)
T 2d3j_A 5 LDQQEESLYLWID---AHQ--ARVLIGFEEDILIVSEGKMA 40 (157)
T ss_dssp SCCCCCCCEEEEC---HHH--HHHHHSSCCCEEEESTTCCC
T ss_pred CCCCCCCEEEEEC---HHH--HHHHCCCCCEEEEEECCEEC
T ss_conf 5667773589988---999--88762887379999788914
No 20
>2kie_A Inositol polyphosphate 5-phosphatase OCRL-1; INPP5B, clathrin, endocytosis, alternative splicing, cataract, disease mutation, hydrolase; NMR {Homo sapiens}
Probab=25.86 E-value=20 Score=14.79 Aligned_cols=17 Identities=47% Similarity=0.659 Sum_probs=13.3
Q ss_pred CCCCCCCCCCCCCEEEE
Q ss_conf 78667764336988999
Q gi|254780939|r 41 PSGSMIPTLLVGDYIIV 57 (248)
Q Consensus 41 ps~SM~PTL~~GD~i~V 57 (248)
|.+||+|.+-+|-.-+.
T Consensus 2 ~~~~mep~~~~~~qp~a 18 (124)
T 2kie_A 2 PLGSMEPPLPVGAQPLA 18 (124)
T ss_dssp CSCSSCCSSCSSCEEEE
T ss_pred CCCCCCCCCCCCCCCCC
T ss_conf 97665888888877521
No 21
>3o4v_A MTA/SAH nucleosidase; mixed alpha/beta dimer, hydrolase; HET: 4CT; 1.75A {Escherichia coli} PDB: 1jys_A* 1nc1_A* 1nc3_A* 1y6q_A* 1y6r_A* 1z5p_A* 3df9_A* 1z5n_A* 1z5o_A*
Probab=23.56 E-value=29 Score=13.81 Aligned_cols=21 Identities=38% Similarity=0.793 Sum_probs=18.9
Q ss_pred CCCCCCCCCCCCEEEEECCCC
Q ss_conf 866776433698899984005
Q gi|254780939|r 42 SGSMIPTLLVGDYIIVNKFSY 62 (248)
Q Consensus 42 s~SM~PTL~~GD~i~VnK~~Y 62 (248)
.||+.|.+..||.+++++..|
T Consensus 79 aG~l~~~l~~Gdvvi~~~~~~ 99 (234)
T 3o4v_A 79 AGGLAPTLKVGDIVVSDEARY 99 (234)
T ss_dssp EEECSTTCCTTCEEEEEEEEE
T ss_pred CCCCCCCCCCCCEEEEEEEEE
T ss_conf 266776632787999868997
No 22
>1ub4_A MAZF protein; toxin, antidote, programmed cell death, post-segregation, addiction module, structural genomics, PSI; 1.70A {Escherichia coli} SCOP: b.34.6.2
Probab=22.61 E-value=30 Score=13.74 Aligned_cols=13 Identities=23% Similarity=0.562 Sum_probs=10.3
Q ss_pred CCCCCCEEEEECC
Q ss_conf 5334704664014
Q gi|254780939|r 84 QPRRGDVVVFRYP 96 (248)
Q Consensus 84 ~p~RGDIVVF~~P 96 (248)
-|+||||+.-+.+
T Consensus 5 ~P~rGdI~~v~~~ 17 (110)
T 1ub4_A 5 VPDMGDLIWVDFD 17 (110)
T ss_dssp CCCTTEEEEEECC
T ss_pred CCCCCEEEEEECC
T ss_conf 8989989999799
No 23
>2waq_A DNA-directed RNA polymerase RPO1N subunit; multi-subunit, transcription; 3.35A {Sulfolobus shibatae} PDB: 2wb1_A 2pmz_A 3hkz_A
Probab=22.51 E-value=33 Score=13.50 Aligned_cols=35 Identities=34% Similarity=0.551 Sum_probs=19.3
Q ss_pred CCCCCCCCEEEEECCCCCHHH----EEEEEEEECHHHEEEC
Q ss_conf 555334704664014420031----0000003042343200
Q gi|254780939|r 82 NNQPRRGDVVVFRYPKDPSID----YVKRVIGLPGDRISLE 118 (248)
Q Consensus 82 ~~~p~RGDIVVF~~P~d~~~~----yVKRvIGlPGDtV~i~ 118 (248)
.++...||+|+|+ .+|..| .-=|+.=+||.|+++.
T Consensus 408 ~r~~~~gd~vl~n--RqPtLh~~si~~~~~~~~~~~t~~~~ 446 (880)
T 2waq_A 408 ERHLTDGDVVLFN--RQPSLHRISMMAHRVRVLKGLTFRLN 446 (880)
T ss_dssp EEECCTTCEEEEE--CSSCCSSTTEEEEEEEECSSSSEEEC
T ss_pred EEEECCCCEEEEC--CCCCCCCCCCEEEEEEECCCCEEEEC
T ss_conf 6652069578862--67543412202135675047536536
No 24
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=22.12 E-value=33 Score=13.45 Aligned_cols=13 Identities=23% Similarity=0.343 Sum_probs=8.2
Q ss_pred CCCEEEEEECCCC
Q ss_conf 4464999717887
Q gi|254780939|r 182 PKGHYFMMGDNRD 194 (248)
Q Consensus 182 P~g~yfvlGDNRd 194 (248)
-.|++|+-|.|.+
T Consensus 185 ~NG~iwi~~~~~~ 197 (235)
T 2z0s_A 185 RNGRIHLECPNED 197 (235)
T ss_dssp TTTEEEEECSCHH
T ss_pred CCEEEEEEECCHH
T ss_conf 8959999827989
No 25
>3bga_A Beta-galactosidase; NYSGXRC, protein structure initiative II (PSI-II), glycosyl hydrolase family 2, jelly-roll fold; 2.10A {Bacteroides thetaiotaomicron vpi-5482} PDB: 3dec_A
Probab=21.75 E-value=27 Score=13.98 Aligned_cols=16 Identities=38% Similarity=0.686 Sum_probs=7.9
Q ss_pred HEEECCCCEEECCCCC
Q ss_conf 4320077324535312
Q gi|254780939|r 114 RISLEKGIIYINGAPV 129 (248)
Q Consensus 114 tV~i~~~~l~INg~~i 129 (248)
+|+++++.++|||+++
T Consensus 337 ~v~~~~~~f~lNG~pv 352 (1010)
T 3bga_A 337 TSEIKDGRFCINGVPV 352 (1010)
T ss_dssp CEEEETTEEEETTEEC
T ss_pred EEEEECCEEEECCEEE
T ss_conf 9999699998999981
No 26
>2p1g_A Putative xylanase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.80A {Bacteroides fragilis YCH46}
Probab=20.63 E-value=36 Score=13.26 Aligned_cols=39 Identities=15% Similarity=0.190 Sum_probs=19.2
Q ss_pred CCCCEEEEEECCCCCCCCCCCCCCCCCCHHHEEEEEEEEEEECC
Q ss_conf 24464999717887776445365302608882533899997437
Q gi|254780939|r 181 VPKGHYFMMGDNRDKSKDSRWVEVGFVPEENLVGRASFVLFSIG 224 (248)
Q Consensus 181 VP~g~yfvlGDNRdnS~DSR~~~~G~Vp~~~IvGka~~i~~S~d 224 (248)
+|.|-|..+==+. ..+|=- +-|++=+. -|+..++=-|..
T Consensus 172 L~~GDiI~i~t~~-~GLDVs--HvGi~i~~--~~~l~~~hASS~ 210 (249)
T 2p1g_A 172 IKNGDIIALTTNT-PGLDVS--HMGIAIYI--KGQLHLLHASSK 210 (249)
T ss_dssp SCTTCEEEEEECS-TTCSEE--EEEEEEEE--TTEEEEEEEETT
T ss_pred CCCCCEEEEEECC-CCCCEE--EEEEEEEE--CCCEEEEECCCC
T ss_conf 8898889999548-997067--88899995--895689962775
No 27
>2bkf_A Zinc-finger protein NBR1 (NEXT to breast cancer 1); PB1 domain, interaction domain, polymorphism; 1.56A {Homo sapiens} SCOP: d.15.2.2 PDB: 2g4s_A
Probab=20.10 E-value=33 Score=13.50 Aligned_cols=32 Identities=19% Similarity=0.274 Sum_probs=16.9
Q ss_pred CCCEEEEEC--CCCCHHH----EEEEEEEECHHHEEEC
Q ss_conf 470466401--4420031----0000003042343200
Q gi|254780939|r 87 RGDVVVFRY--PKDPSID----YVKRVIGLPGDRISLE 118 (248)
Q Consensus 87 RGDIVVF~~--P~d~~~~----yVKRvIGlPGDtV~i~ 118 (248)
.||++-|.- |.+.... -|++..+++.=++.+.
T Consensus 14 ~~dirrf~v~~~~~~s~~~L~~~v~~~f~l~~~~l~Y~ 51 (87)
T 2bkf_A 14 KNEIQSFLVSDPENTTWADIEAMVKVSFDLNTIQIKYL 51 (87)
T ss_dssp TTEEEEEEESCGGGCCHHHHHHHHHHHHTCSSEEEEEE
T ss_pred CCEEEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEEE
T ss_conf 89279999558889889999999998739874379999
Done!