Query gi|254780939|ref|YP_003065352.1| type I signal peptidase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 248
No_of_seqs 132 out of 2445
Neff 6.6
Searched_HMMs 13730
Date Wed Jun 1 10:59:33 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780939.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1b12a_ b.87.1.2 (A:) Type 1 s 100.0 0 0 386.6 12.6 203 31-247 1-246 (247)
2 d1jhfa2 b.87.1.1 (A:73-198) Le 97.3 0.00015 1.1E-08 45.6 5.3 49 37-110 40-89 (126)
3 d1f39a_ b.87.1.1 (A:) lambda r 97.2 0.00034 2.5E-08 43.4 5.9 48 38-109 8-61 (101)
4 d1umua_ b.87.1.1 (A:) UmuD' {E 97.0 0.0005 3.7E-08 42.3 4.9 46 38-108 23-69 (105)
5 d1zvpa1 d.58.18.9 (A:2-67) Hyp 63.0 1.3 9.8E-05 20.7 1.4 16 43-58 11-26 (66)
6 d2io8a2 d.3.1.15 (A:10-200) Gl 59.3 4.7 0.00034 17.3 4.2 35 83-117 101-136 (191)
7 d2pp6a1 b.106.1.2 (A:1-93) Gif 52.0 4.1 0.0003 17.7 2.4 20 84-107 60-79 (93)
8 d1rutx4 g.39.1.3 (X:114-146) L 42.2 3.7 0.00027 18.0 0.9 17 109-125 9-25 (33)
9 d1bhga3 c.1.8.3 (A:329-632) be 37.9 6.4 0.00046 16.5 1.5 13 210-224 251-263 (304)
10 d2evra2 d.3.1.16 (A:87-234) Ce 30.7 8.4 0.00061 15.7 1.2 34 63-96 52-85 (148)
11 d2pu9b1 b.34.4.3 (B:1-73) Ferr 28.3 15 0.0011 14.2 2.3 28 89-118 12-39 (73)
12 d1je0a_ c.56.2.1 (A:) 5'-deoxy 21.5 20 0.0014 13.4 3.2 23 41-63 87-109 (234)
No 1
>d1b12a_ b.87.1.2 (A:) Type 1 signal peptidase {Escherichia coli [TaxId: 562]}
Probab=100.00 E-value=0 Score=386.62 Aligned_cols=203 Identities=40% Similarity=0.754 Sum_probs=150.3
Q ss_pred HHEEEEEEEECCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHEEEEEEEE
Q ss_conf 75168989987866776433698899984005876641221154222211255533470466401442003100000030
Q gi|254780939|r 31 RTFLFQPSVIPSGSMIPTLLVGDYIIVNKFSYGYSKYSFPFSYNLFNGRIFNNQPRRGDVVVFRYPKDPSIDYVKRVIGL 110 (248)
Q Consensus 31 r~fv~~~f~Ips~SM~PTL~~GD~i~VnK~~YG~~~~~~p~~~~~~~~~i~~~~p~RGDIVVF~~P~d~~~~yVKRvIGl 110 (248)
|+|++|+|+|||+||||||+.||+|||||++||+|.|.... ..+..+.|+|||||||++|.+++..|||||+|+
T Consensus 1 R~f~~~~f~IPs~SMePTL~~GD~l~V~K~~Yg~r~P~~~~------~~~~~~~~~rgdivvf~~p~~~~~~~ikR~ig~ 74 (247)
T d1b12a_ 1 RSFIYEPFQIPSGSMMPTLLIGDFILVEKFAYGIKDPIYQK------TLIETGHPKRGDIVVFKYPEDPKLDYIKRAVGL 74 (247)
T ss_dssp CBCCEEEEECCSCTTTTTSCTTEEEEEEESEEEEECGGGSC------EEEEECCCCTTCEEEEECTTCTTSEEEEEEEEC
T ss_pred CEEEEEEEEECCCCCCCHHCCCCEEEEECCCCCCCCCCCCC------CCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCC
T ss_conf 97999989938602601121698899992656766776585------002246864472555368888875431024478
Q ss_pred CHHHEEECCCCEEECCCCCCCCCCCCCE---EECC-------------------------------CCCCEEEEEECCCC
Q ss_conf 4234320077324535312245446400---2214-------------------------------78620122102214
Q gi|254780939|r 111 PGDRISLEKGIIYINGAPVVRHMEGYFS---YHYK-------------------------------EDWSSNVPIFQEKL 156 (248)
Q Consensus 111 PGDtV~i~~~~l~INg~~i~~~~~~~~~---~~~~-------------------------------~~~~~~~~~~~e~l 156 (248)
|||+|++.+...++|.++.......... .... .........+.|++
T Consensus 75 pGD~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (247)
T d1b12a_ 75 PGDKVTYDPVSKELTIQPGCSSGQACENALPVTYSNVEPSDFVQTFSRRNGGEATSGFFEVPKNETKENGIRLSERKETL 154 (247)
T ss_dssp TTCEEEEETTTTEEEEETTCCSSCCCCCCCCEEECCCEEEEEEEEEECGGGSCEEEEEEECCTTCCCTTEEEEEEEEEEE
T ss_pred CCCEEEEECCCCEEEECCCCCCCCEEECCEEECCCCCCCCCCEEEEEECCCCEECCCEEECCCCCCCCCCEEEEEEEECC
T ss_conf 88768973265147751355555044232551124347430000231016862035325414654355755830123305
Q ss_pred CCCCCCCEEE---------CCCCCCCCCCCEEECCCCEEEEEECCCCCCCCCCCCCCCCCCHHHEEEEEEEEEEECCCCC
Q ss_conf 6785000221---------2455788745302324464999717887776445365302608882533899997437887
Q gi|254780939|r 157 SNGVLYNVLS---------QDFLAPSSNISEFLVPKGHYFMMGDNRDKSKDSRWVEVGFVPEENLVGRASFVLFSIGGDT 227 (248)
Q Consensus 157 ~~~~~~~~~~---------~~~~~~~~~~~~~~VP~g~yfvlGDNRdnS~DSR~~~~G~Vp~~~IvGka~~i~~S~d~~~ 227 (248)
++ ..+.++. .......++.++++||+||||||||||+||+|||| ||+||+++|+|||++||||+++..
T Consensus 155 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vp~~~yfvmGDNR~nS~DSR~--wG~Vp~~~I~Gka~~i~~p~~~~~ 231 (247)
T d1b12a_ 155 GD-VTHRILTVPIAQDQVGMYYQQPGQQLATWIVPPGQYFMMGDNRDNSADSRY--WGFVPEANLVGRATAIWMSFDKQE 231 (247)
T ss_dssp TT-EEEEEEECTTCCCCGGGSCCCTTCCTTEEECCTTEEEEECSBTTSCCCHHH--HCCEEGGGEEEEEEEEEEEBC---
T ss_pred CC-CCEEEEECCCCHHCCCCCCCCCCCCCCEEEEECCEEEEECCCCCCCCCCCC--CCCCCHHHEEEEEEEEEEECCCCC
T ss_conf 88-302677524530001200047865252089717749995478777751254--576778995899999998788876
Q ss_pred CCCCCCCCCCCCCHHHCCCC
Q ss_conf 75435554567013342232
Q gi|254780939|r 228 PFSKVWLWIPNMRWDRLFKI 247 (248)
Q Consensus 228 ~~~~~~~~~~~iRw~R~f~~ 247 (248)
. .|++++||+||++.
T Consensus 232 ~-----~~~~~~r~~Rig~~ 246 (247)
T d1b12a_ 232 G-----EWPTGLRLSRIGGI 246 (247)
T ss_dssp ----------CBCGGGCBCC
T ss_pred C-----CCCCCCCCCCCCCC
T ss_conf 7-----57677641236047
No 2
>d1jhfa2 b.87.1.1 (A:73-198) LexA C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=97.34 E-value=0.00015 Score=45.60 Aligned_cols=49 Identities=33% Similarity=0.334 Sum_probs=39.5
Q ss_pred EEEECCCCCCCC-CCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHEEEEEEEE
Q ss_conf 899878667764-33698899984005876641221154222211255533470466401442003100000030
Q gi|254780939|r 37 PSVIPSGSMIPT-LLVGDYIIVNKFSYGYSKYSFPFSYNLFNGRIFNNQPRRGDVVVFRYPKDPSIDYVKRVIGL 110 (248)
Q Consensus 37 ~f~Ips~SM~PT-L~~GD~i~VnK~~YG~~~~~~p~~~~~~~~~i~~~~p~RGDIVVF~~P~d~~~~yVKRvIGl 110 (248)
..+|.++||+|+ +..||.|+|.+- .+++-|||||+.. + +..+|||+.=.
T Consensus 40 ~lrV~GdSM~~~~i~~gd~viv~~~----------------------~~~~~G~ivv~~~--~-ge~~vKrl~~~ 89 (126)
T d1jhfa2 40 LLRVSGMSMKDIGIMDGDLLAVHKT----------------------QDVRNGQVVVARI--D-DEVTVKRLKKQ 89 (126)
T ss_dssp EEECCSSTTGGGTCCTTCEEEEEEC----------------------SCCCTTSEEEEEE--T-TEEEEEEEEEE
T ss_pred EEEECCCCCCCCCCCCCEEEEEECC----------------------CCCCCCCEEEEEE--C-CEEEEEEEEEC
T ss_conf 9999487666741479979997136----------------------4033998999999--9-99999999982
No 3
>d1f39a_ b.87.1.1 (A:) lambda repressor C-terminal domain {Bacteriophage lambda [TaxId: 10710]}
Probab=97.21 E-value=0.00034 Score=43.37 Aligned_cols=48 Identities=23% Similarity=0.250 Sum_probs=36.8
Q ss_pred EEECCCCC------CCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHEEEEEEE
Q ss_conf 99878667------7643369889998400587664122115422221125553347046640144200310000003
Q gi|254780939|r 38 SVIPSGSM------IPTLLVGDYIIVNKFSYGYSKYSFPFSYNLFNGRIFNNQPRRGDVVVFRYPKDPSIDYVKRVIG 109 (248)
Q Consensus 38 f~Ips~SM------~PTL~~GD~i~VnK~~YG~~~~~~p~~~~~~~~~i~~~~p~RGDIVVF~~P~d~~~~yVKRvIG 109 (248)
.+|.++|| ||++..||.|+|++- .+|+.||+|++.... ...++||+.=
T Consensus 8 l~V~GdSM~~~~~~ep~i~~Gd~viVd~~----------------------~~~~~g~ivva~~~~--~~~~vKr~~~ 61 (101)
T d1f39a_ 8 LEVEGNSMTAPTGSKPSFPDGMLILVDPE----------------------QAVEPGDFCIARLGG--DEFTFKKLIR 61 (101)
T ss_dssp EECCSSTTCCCTTCSSCCCTTCEEEEETT----------------------SCCCTTCEEEEECTT--SCEEEEEEEE
T ss_pred EEEECCCCCCCCCCCCCCCCCCEEEEEEC----------------------CCCCCCCEEEEEECC--CEEEEEEEEE
T ss_conf 99958754788666898498999999814----------------------755779899999889--8089999997
No 4
>d1umua_ b.87.1.1 (A:) UmuD' {Escherichia coli [TaxId: 562]}
Probab=96.96 E-value=0.0005 Score=42.28 Aligned_cols=46 Identities=24% Similarity=0.229 Sum_probs=37.2
Q ss_pred EEECCCCC-CCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHEEEEEE
Q ss_conf 99878667-764336988999840058766412211542222112555334704664014420031000000
Q gi|254780939|r 38 SVIPSGSM-IPTLLVGDYIIVNKFSYGYSKYSFPFSYNLFNGRIFNNQPRRGDVVVFRYPKDPSIDYVKRVI 108 (248)
Q Consensus 38 f~Ips~SM-~PTL~~GD~i~VnK~~YG~~~~~~p~~~~~~~~~i~~~~p~RGDIVVF~~P~d~~~~yVKRvI 108 (248)
.+|-+.|| +|.+..||.++|.|- .+|+.|||||+.. ++..+|||..
T Consensus 23 ~rV~GdSM~~~gI~~GDlliVd~~----------------------~~~~~g~ivva~i---~ge~~vKrl~ 69 (105)
T d1umua_ 23 VKASGDSMIDGGISDGDLLIVDSA----------------------ITASHGDIVIAAV---DGEFTVKKLQ 69 (105)
T ss_dssp EECCSSTTGGGTCCTTCEEEEETT----------------------SCCCTTCEEEEEE---TTEEEEEEEE
T ss_pred EEECCCCCCCCCCCCCCEEEEECC----------------------CCCCCCCEEEEEE---CCEEEEEEEE
T ss_conf 999188533476089989999825----------------------5544575899999---9999999999
No 5
>d1zvpa1 d.58.18.9 (A:2-67) Hypothetical protein VC0802 {Vibrio cholerae [TaxId: 666]}
Probab=63.01 E-value=1.3 Score=20.72 Aligned_cols=16 Identities=44% Similarity=0.870 Sum_probs=14.8
Q ss_pred CCCCCCCCCCCEEEEE
Q ss_conf 6677643369889998
Q gi|254780939|r 43 GSMIPTLLVGDYIIVN 58 (248)
Q Consensus 43 ~SM~PTL~~GD~i~Vn 58 (248)
.||.|.|..|+|+|++
T Consensus 11 ~~m~P~L~~g~yVF~t 26 (66)
T d1zvpa1 11 QSMSPELMAGDYVFCT 26 (66)
T ss_dssp HTCEEEECSSCEEEEE
T ss_pred HHCCCEECCCCEEEEE
T ss_conf 7798667899689999
No 6
>d2io8a2 d.3.1.15 (A:10-200) Glutathionylspermidine synthase, amidase domain {Escherichia coli [TaxId: 562]}
Probab=59.30 E-value=4.7 Score=17.29 Aligned_cols=35 Identities=14% Similarity=0.323 Sum_probs=21.6
Q ss_pred CCCCCCCEEEEECC-CCCHHHEEEEEEEECHHHEEE
Q ss_conf 55334704664014-420031000000304234320
Q gi|254780939|r 83 NQPRRGDVVVFRYP-KDPSIDYVKRVIGLPGDRISL 117 (248)
Q Consensus 83 ~~p~RGDIVVF~~P-~d~~~~yVKRvIGlPGDtV~i 117 (248)
..|+.|||+|+..- .+...-=|--|+.+-+|+|.+
T Consensus 101 ~~P~~Gdllv~~~~~~~~~~GHVavV~~v~~~~v~i 136 (191)
T d2io8a2 101 RAPVAGALLIWDKGGEFKDTGHVAIITQLHGNKVRI 136 (191)
T ss_dssp SCCCTTCEEEECSBTTBTTTCEEEEEEEECSSEEEE
T ss_pred CCCCCCCEEEECCCCCCCCCEEEEEEEEECCCEEEE
T ss_conf 899987399977888899710699999857998999
No 7
>d2pp6a1 b.106.1.2 (A:1-93) Gifsy-2 prophage protein STM1035 {Salmonella typhimurium [TaxId: 90371]}
Probab=51.95 E-value=4.1 Score=17.65 Aligned_cols=20 Identities=55% Similarity=0.679 Sum_probs=14.5
Q ss_pred CCCCCCEEEEECCCCCHHHEEEEE
Q ss_conf 533470466401442003100000
Q gi|254780939|r 84 QPRRGDVVVFRYPKDPSIDYVKRV 107 (248)
Q Consensus 84 ~p~RGDIVVF~~P~d~~~~yVKRv 107 (248)
+|+|||.||+. .+.+.|+|-
T Consensus 60 kPrr~D~Vv~~----G~~~~VTr~ 79 (93)
T d2pp6a1 60 IPRRGDRVVLR----GSEFTVTRI 79 (93)
T ss_dssp CCCTTCEEEET----TEEEEEEEE
T ss_pred CCCCCCEEEEC----CCEEEEEEE
T ss_conf 35899867864----868999989
No 8
>d1rutx4 g.39.1.3 (X:114-146) LIM only 4 (Lmo4) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=42.21 E-value=3.7 Score=17.98 Aligned_cols=17 Identities=29% Similarity=0.636 Sum_probs=13.8
Q ss_pred EECHHHEEECCCCEEEC
Q ss_conf 30423432007732453
Q gi|254780939|r 109 GLPGDRISLEKGIIYIN 125 (248)
Q Consensus 109 GlPGDtV~i~~~~l~IN 125 (248)
=+|||+..+.||.+|-.
T Consensus 9 LVPGDRFHyvNG~lfCE 25 (33)
T d1rutx4 9 LVPGDRFHYINGSLFCE 25 (33)
T ss_dssp CCTTCEEEEETTEEEEG
T ss_pred CCCCCEEEEECCEEEEE
T ss_conf 25775067856779873
No 9
>d1bhga3 c.1.8.3 (A:329-632) beta-Glucuronidase, domain 3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=37.92 E-value=6.4 Score=16.46 Aligned_cols=13 Identities=15% Similarity=0.253 Sum_probs=5.6
Q ss_pred HHEEEEEEEEEEECC
Q ss_conf 882533899997437
Q gi|254780939|r 210 ENLVGRASFVLFSIG 224 (248)
Q Consensus 210 ~~IvGka~~i~~S~d 224 (248)
..+.|- ++|-..|
T Consensus 251 ~~~~G~--~~w~~~D 263 (304)
T d1bhga3 251 KYVVGE--LIWNFAD 263 (304)
T ss_dssp TTEEEE--EEEESBC
T ss_pred CCEEEE--EEEEEEE
T ss_conf 986999--9746486
No 10
>d2evra2 d.3.1.16 (A:87-234) Cell wall-associated hydrolase Spr C-terminal domain {Nostoc punctiforme [TaxId: 272131]}
Probab=30.65 E-value=8.4 Score=15.72 Aligned_cols=34 Identities=21% Similarity=0.152 Sum_probs=20.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECC
Q ss_conf 8766412211542222112555334704664014
Q gi|254780939|r 63 GYSKYSFPFSYNLFNGRIFNNQPRRGDVVVFRYP 96 (248)
Q Consensus 63 G~~~~~~p~~~~~~~~~i~~~~p~RGDIVVF~~P 96 (248)
|..+|+...........+...+.+.||+|.|..+
T Consensus 52 Gi~lpr~s~~q~~~g~~V~~~~l~pGDLvFf~~~ 85 (148)
T d2evra2 52 GIWLPRDAYQQEGFTQPITIAELVAGDLVFFGTS 85 (148)
T ss_dssp TCCCCSSHHHHHHHSEEECGGGCCTTCEEEEECS
T ss_pred CCCCCCCHHHHHHHCCCCCCCCCCCCEEEEECCC
T ss_conf 9999978799997247653113576406775699
No 11
>d2pu9b1 b.34.4.3 (B:1-73) Ferredoxin thioredoxin reductase (FTR), alpha (variable) chain {Synechocystis sp. [TaxId: 1143]}
Probab=28.29 E-value=15 Score=14.18 Aligned_cols=28 Identities=21% Similarity=0.503 Sum_probs=19.4
Q ss_pred CEEEEECCCCCHHHEEEEEEEECHHHEEEC
Q ss_conf 046640144200310000003042343200
Q gi|254780939|r 89 DVVVFRYPKDPSIDYVKRVIGLPGDRISLE 118 (248)
Q Consensus 89 DIVVF~~P~d~~~~yVKRvIGlPGDtV~i~ 118 (248)
-++||++|+.....+ -+-|+.|+..++-
T Consensus 12 sv~VyhhP~hr~~~~--Dl~G~eGeV~~~v 39 (73)
T d2pu9b1 12 SVVVYHHPEHKKTAF--DLQGMEGEVAAVL 39 (73)
T ss_dssp CCEESCCTTSTTSCE--ECTTCEEEEEEEC
T ss_pred EEEEEECCCCCCCCC--CCCCCEEEEEEEE
T ss_conf 189984876579873--5678787886787
No 12
>d1je0a_ c.56.2.1 (A:) 5'-deoxy-5'-methylthioadenosine phosphorylase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Probab=21.53 E-value=20 Score=13.38 Aligned_cols=23 Identities=39% Similarity=0.847 Sum_probs=19.5
Q ss_pred CCCCCCCCCCCCCEEEEECCCCC
Q ss_conf 78667764336988999840058
Q gi|254780939|r 41 PSGSMIPTLLVGDYIIVNKFSYG 63 (248)
Q Consensus 41 ps~SM~PTL~~GD~i~VnK~~YG 63 (248)
-+|++.|.+..||.++.++..|+
T Consensus 87 taG~l~~~~~~GdiVi~~~a~~~ 109 (234)
T d1je0a_ 87 TTGALVPYINLGEYIIVTGASYN 109 (234)
T ss_dssp EEEECSTTCCTTCEEEEEEEEBC
T ss_pred CCCCCCCCCCCCCEEEECCEEEC
T ss_conf 02446877878977841310431
Done!