RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254780939|ref|YP_003065352.1| type I signal peptidase
[Candidatus Liberibacter asiaticus str. psy62]
(248 letters)
>1b12_A Signal peptidase I; serine proteinase, serine-dependant
hydrolase, signal peptide processing, protein
translocation, membrane bound proteinase; HET: 1PN;
1.95A {Escherichia coli} (A:72-99,A:175-215)
Length = 69
Score = 58.3 bits (141), Expect = 1e-09
Identities = 30/103 (29%), Positives = 43/103 (41%), Gaps = 35/103 (33%)
Query: 107 VIGLPGDRISLEKGIIYINGAPVVRHMEGYFSYHYKEDWSSNVPIFQEKLSNGVLYNVLS 166
+GLPGD+++ + PV + +
Sbjct: 1 AVGLPGDKVTYD---------PVSKELTIQPGCSS------------------------G 27
Query: 167 QDFLAPSSNISEFLVPKGHYFMMGDNRDKSKDSRWVEVGFVPE 209
Q + P ++ ++VP G YFMMGDNRD S DSR+ GFVPE
Sbjct: 28 QYYQQPGQQLATWIVPPGQYFMMGDNRDNSADSRY--WGFVPE 68
>1b12_A Signal peptidase I; serine proteinase, serine-dependant
hydrolase, signal peptide processing, protein
translocation, membrane bound proteinase; HET: 1PN;
1.95A {Escherichia coli} (A:1-71,A:216-248)
Length = 104
Score = 57.2 bits (138), Expect = 2e-09
Identities = 36/77 (46%), Positives = 54/77 (70%), Gaps = 6/77 (7%)
Query: 30 IRTFLFQPSVIPSGSMIPTLLVGDYIIVNKFSYGYSKYSFPFSYNLFNGRIFNNQPRRGD 89
+R+F+++P IPSGSM+PTLL+GD+I+V KF+YG + + P+RGD
Sbjct: 1 VRSFIYEPFQIPSGSMMPTLLIGDFILVEKFAYGIKDPIYQKTLIETGH------PKRGD 54
Query: 90 VVVFRYPKDPSIDYVKR 106
+VVF+YP+DP +DY+KR
Sbjct: 55 IVVFKYPEDPKLDYIKR 71
>2or0_A Hydroxylase; APC7385, rhodococcus SP. RHA1, structural
genomics, PSI-2, protein structure initiative, midwest
center for structural genomics; HET: MSE; 2.10A
{Rhodococcus SP} (A:109-244)
Length = 136
Score = 30.4 bits (68), Expect = 0.25
Identities = 7/47 (14%), Positives = 17/47 (36%), Gaps = 6/47 (12%)
Query: 176 ISEFLVPKGHYFMMGDNRDK--SKDSRWVEVGF----VPEENLVGRA 216
++P+ Y ++ D D + + ++ VP + A
Sbjct: 74 SLHVILPRTDYQIVEDTWDVIGLRGTGSKDLIVDGAFVPGYRTLNAA 120
>2uva_G Fatty acid synthase beta subunits; fungal, dehydratase,
enoyl reductase, ketoacyl synthase, ketoacyl reductase;
HET: FMN; 3.10A {Thermomyces lanuginosus} PDB: 2uvc_G*
(G:1106-1261)
Length = 156
Score = 27.5 bits (61), Expect = 1.9
Identities = 9/22 (40%), Positives = 11/22 (50%), Gaps = 2/22 (9%)
Query: 79 RIFNNQPRRGDVVVFRYPKDPS 100
R+F P RG V P DP+
Sbjct: 71 RLF--APTRGMYVEITNPDDPA 90
>2fjr_A Repressor protein CI; genetic switch, regulation,
cooperativity, transcription regulator; 1.95A
{Enterobacteria phage 186} PDB: 2fkd_A (A:71-189)
Length = 119
Score = 27.3 bits (60), Expect = 2.3
Identities = 8/75 (10%), Positives = 17/75 (22%), Gaps = 26/75 (34%)
Query: 44 SMIPTLLVGDYIIVNKFSYGYSKYSFPFSYNLFNGRIFNNQPRRGDVVVFRYPKDPSIDY 103
+ G V+K G +V
Sbjct: 44 DGMAIRSEGKIYFVDK----------------------QASLSDGLWLVDIKGA----IS 77
Query: 104 VKRVIGLPGDRISLE 118
++ + LPG ++ +
Sbjct: 78 IRELTKLPGRKLHVA 92
>2uv8_G Fatty acid synthase subunit beta (FAS1); fatty acid
biosynthesis, malonyl/palmitoyl transferase,
phosphopantetheine, transferase; HET: GVL FMN; 3.10A
{Saccharomyces cerevisiae} PDB: 2vkz_G* 3hmj_G*
(G:1103-1260)
Length = 158
Score = 27.1 bits (60), Expect = 2.4
Identities = 12/75 (16%), Positives = 24/75 (32%), Gaps = 16/75 (21%)
Query: 79 RIFNNQPRRGDVVVFRYPKDPSI-----------DYVKRVI--GLPGDRISLEKGIIYIN 125
++F +P +G VV S + VI L + I +E I
Sbjct: 53 KVF--KPSQGMVVEISNGNTSSKTVVTLSEPVQGELKPTVILKLLKENIIQMEM-IENRT 109
Query: 126 GAPVVRHMEGYFSYH 140
+ ++++
Sbjct: 110 MDGKPVSLPLLYNFN 124
>2d29_A Acyl-COA dehydrogenase; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; HET: FAD; 1.65A {Thermus thermophilus HB8}
(A:121-232)
Length = 112
Score = 26.9 bits (59), Expect = 3.0
Identities = 12/47 (25%), Positives = 18/47 (38%), Gaps = 7/47 (14%)
Query: 175 NISEFLVPKGH-YFMMGDNRDKS--KDSRWVEVGF----VPEENLVG 214
IS F + +G +K S ++ VPEE L+G
Sbjct: 66 GISAFAFFRPERGLKVGRKEEKLGLTASDTAQLILEDLFVPEEALLG 112
>3k3w_B Penicillin G acylase; hydrolase; 3.31A {Alcaligenes
faecalis} (B:338-440)
Length = 103
Score = 26.4 bits (58), Expect = 3.5
Identities = 10/77 (12%), Positives = 25/77 (32%), Gaps = 10/77 (12%)
Query: 15 DTLKSILQALFFAILIRTFLFQPSVIPSGSMIPTLLVGDYIIVNKFSYGYSKYSFPFSYN 74
L ++ A+ +T GS+ + +G +++ + P N
Sbjct: 16 QVLMPVVPESHRAMYSQTGFATQQGPNPGSINLS--MGTKVLLRALVLE--AHPDPKRVN 71
Query: 75 LFNGRIFNNQPRRGDVV 91
+F R +++
Sbjct: 72 VFGER------SSQEIM 82
>1r2j_A Protein FKBI; polyketide synthase, polyketide, acyl-COA
dehydrogenase, , aldehyde dehydrogenase, oxidoreductase;
HET: FAD; 2.10A {Streptomyces hygroscopicus} (A:105-209)
Length = 105
Score = 25.3 bits (55), Expect = 7.1
Identities = 5/46 (10%), Positives = 14/46 (30%), Gaps = 7/46 (15%)
Query: 176 ISEFLVPKGHY-FMMGDNRDKS--KDSRWVEVGF----VPEENLVG 214
+ +VP + S + + ++ VP ++
Sbjct: 59 GAVVVVPADTPGVRVERVPKPSGCRAAGHADLHLDQVRVPAGAVLA 104
>2vig_A Short-chain specific acyl-COA dehydrogenase,; fatty acid
metabolism, FAD, polymorphism, flavoprotein,
mitochondrion, disease mutation; HET: FAD COS; 1.9A
{Homo sapiens} PDB: 1jqi_A* (A:117-227)
Length = 111
Score = 25.4 bits (55), Expect = 7.9
Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 7/45 (15%)
Query: 177 SEFLVPKGH-YFMMGDNRDKS--KDSRWVEVGF----VPEENLVG 214
S FLVP +G DK + S + F +P+++++G
Sbjct: 67 SAFLVPMPTPGLTLGKKEDKLGIRGSSTANLIFEDCRIPKDSILG 111
>2z1q_A Acyl-COA dehydrogenase; FAD, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; HET: FAD; 2.30A {Thermus thermophilus}
(A:104-248)
Length = 145
Score = 25.4 bits (54), Expect = 8.4
Identities = 9/48 (18%), Positives = 17/48 (35%), Gaps = 7/48 (14%)
Query: 175 NISEFLVPKGHYFMMGDNRDKSKDSRWVEVG-------FVPEENLVGR 215
+ + FLV + + +K + VP EN++G
Sbjct: 98 HFTAFLVERDTPGLSFGPEEKKMGIKASSTRQVILEDVKVPVENVLGE 145
>3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics,
PSI-2, protein structure initiative, northeast
structural genomics consortium; 2.30A {Enterococcus
faecalis} PDB: 3fd8_A* 3hnp_A (A:126-349)
Length = 224
Score = 25.2 bits (55), Expect = 9.2
Identities = 6/39 (15%), Positives = 12/39 (30%), Gaps = 5/39 (12%)
Query: 130 VRHMEGYFSYHYKEDWSSNVPIFQEKLSNGVLYNVLSQD 168
+ +E + Y+ + Q NG Y +
Sbjct: 21 INEVETHIDYYRPGSITE-----QGPKENGSFYGLGIHL 54
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.325 0.143 0.454
Gapped
Lambda K H
0.267 0.0610 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 2,091,274
Number of extensions: 98574
Number of successful extensions: 321
Number of sequences better than 10.0: 1
Number of HSP's gapped: 321
Number of HSP's successfully gapped: 21
Length of query: 248
Length of database: 4,956,049
Length adjustment: 86
Effective length of query: 162
Effective length of database: 2,048,819
Effective search space: 331908678
Effective search space used: 331908678
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (24.4 bits)