HHsearch alignment for GI: 254780940 and conserved domain: pfam00035
>pfam00035 dsrm Double-stranded RNA binding motif. Putative motif shared by proteins that bind to dsRNA. At least some DSRM proteins seem to bind to specific RNA targets. Exemplified by Staufen, which is involved in localization of at least five different mRNAs in the early Drosophila embryo. Also by interferon-induced protein kinase in humans, which is part of the cellular response to dsRNA.
Probab=99.33 E-value=4.9e-12 Score=94.03 Aligned_cols=66 Identities=36% Similarity=0.534 Sum_probs=60.6
Q ss_pred HHHHHHHHHHCCCCCCCCCCEECCCCCCCCCEEEEEEEECCEEEEEEEECCHHHHHHHHHHHHHHHC
Q ss_conf 2588987532022333343101020778884599999999989999996898999999999999974
Q gi|254780940|r 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 (227)
Q Consensus 157 pK~~Lqe~~q~~~~~~P~Y~~~~~~g~~~~~~f~v~v~v~g~~~g~g~g~SkK~Ae~~AA~~AL~kl 223 (227)
T Consensus 1 ~ks~L~e~~~~~~~-~~~~~~~~~~~~~~~~~F~~~v~v~~~~~~~g~g~sKK~A~~~AA~~aL~~L 66 (66)
T pfam00035 1 PKSLLQELCQKKGK-KPPYEYVEEEGPSHSPTFTVTVTVGGKKYGTGTGSSKKEAKQLAAEKALQKL 66 (66)
T ss_pred CCHHHHHHHHHCCC-CCCEEEEEEECCCCCCEEEEEEEECCEEEEECCCCCHHHHHHHHHHHHHHHC
T ss_conf 94499999996295-9899999848899886599999979989874388889999999999999849