HHsearch alignment for GI: 254780940 and conserved domain: smart00535

Probab=100.00  E-value=2.5e-36  Score=243.54  Aligned_cols=127  Identities=42%  Similarity=0.583  Sum_probs=118.2

Q ss_pred             HHHHHHCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEC
Q ss_conf             99998424612126676654778874586886454787764104688789988888887443345454313877200103
Q gi|254780940|r   21 SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVS  100 (227)
Q Consensus        21 ~ll~~A~th~S~~~~~~~~~erLEflGDavL~~~v~~~l~~~~p~~~eG~lt~lr~~lV~n~~La~~a~~lgl~~~l~~~  100 (227)
T Consensus         1 ~ll~~Alth~S~~~~~-~~yerLEfLGDavL~~~v~~~l~~~~p~~~eg~lt~~r~~lvsn~~La~ia~~lgL~~~i~~~   79 (129)
T smart00535        1 SLLLRALTHASYSNEH-EHNERLEFLGDAVLELVVTEYLYKKYPDLSEGDLSRLRSALVSNETLARLAKKLGLGEFIRLG   79 (129)
T ss_pred             CHHHHHHCCCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHC
T ss_conf             9788976461646788-755999998999999999999998588888017999999998588999999986909997626


Q ss_pred             CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCCC
Q ss_conf             663123753133333266999999996415542200122102564311
Q gi|254780940|r  101 SDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRAL  148 (227)
Q Consensus       101 ~~~~~~~~~~~~~ilad~fEA~iGAiy~d~G~~~~~~~i~~~~~~~~~  148 (227)
T Consensus        80 ~~~~~~~~~~~~ki~ad~~EAliGAiyld~G~~~~~~~l~~~~~~~l~  127 (129)
T smart00535       80 RGEAISGGRDKPSILADVFEALIGAIYLDSGLEAAREFIRDLLGPRLE  127 (129)
T ss_pred             CCHHHCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_conf             613213664466621069999999999976799999999999999986