HHsearch alignment of GI: 254780940 and MMDB domain: 2nug_A_1-148

>2nug_A (A:1-148) Ribonuclease III, RNAse III; dsRNA, RNA interference, endonucleolytic cleavage, hydrolase/RNA complex; 1.70A {Aquifex aeolicus}
Probab=100.00  E-value=6.5e-37  Score=246.70  Aligned_cols=144  Identities=38%  Similarity=0.559  Sum_probs=130.7

Q ss_pred             CHHHHHHHHCCCCCCHHHHHHHCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             88999998369658989999842461212667665477887458688645478776410468878998888888744334
Q gi|254780940|r    5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETC   84 (227)
Q Consensus         5 ~~~~l~~~lgy~f~~~~ll~~A~th~S~~~~~~~~~erLEflGDavL~~~v~~~l~~~~p~~~eG~lt~lr~~lV~n~~L   84 (227)
                      ++++++++|||+|+|++|+.+||||+||....  +||||||+||+||++++++++|.+||+.+||.+|.+|+.+|||++|
T Consensus         3 ~l~~~~~~lgy~f~~~~ll~~Alth~s~~~~~--~nerLe~lGdsil~~~v~~~l~~~~p~~~~~~l~~~r~~lv~n~~l   80 (148)
T 2nug_A            3 MLEQLEKKLGYTFKDKSLLEKALTHVSYSKKE--HYETLEFLGDALVNFFIVDLLVQYSPNKREGFLSPLKAYLISEEFF   80 (148)
T ss_dssp             CHHHHHHHHTCCCSSHHHHHHHHBCTTTCSSS--CSHHHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHTSHHHH
T ss_pred             HHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHH
T ss_conf             69999999798828889999986574768888--6289999899999887666655218971356688888998613048


Q ss_pred             HHHHHHCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC--CCCHHHHHCCCCCCCCCCCCCCCCHHH
Q ss_conf             545431387720010366312375313333326699999999641554--220012210256431110001345258
Q gi|254780940|r   85 SQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQRALKSGKFRRDAKT  159 (227)
Q Consensus        85 a~~a~~lgl~~~l~~~~~~~~~~~~~~~~ilad~fEA~iGAiy~d~G~--~~~~~~i~~~~~~~~~~~~~~~~dpK~  159 (227)
                      +.+|.++|++++++.+.+.      .+++++||+|||+|||||+|+|+  +.++.|+.+++.+.+..   ..+||||
T Consensus        81 a~~a~~~gl~~~i~~~~~~------~~~k~lad~~eAliGAvy~d~g~~l~~v~~~i~~l~~~~l~~---~~~d~Kt  148 (148)
T 2nug_A           81 NLLAQKLELHKFIRIKRGK------INETIIGDVFEALWAAVYIDSGRDANFTRELFYKLFKEDILS---AIKEGRV  148 (148)
T ss_dssp             HHHHHTTTGGGTCBSCTTC------CCHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHH---HHHTTCS
T ss_pred             HHHHHHCCCCCCCHHHHHH------HCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH---HHHHCCC
T ss_conf             7887742774202245554------243222549999999998725853123367777656767666---5430102