HHsearch alignment of GI: 254780940 and MMDB domain: 2nug_A_1-148
>2nug_A (A:1-148) Ribonuclease III, RNAse III; dsRNA, RNA interference, endonucleolytic cleavage, hydrolase/RNA complex; 1.70A {Aquifex aeolicus}
Probab=100.00 E-value=6.5e-37 Score=246.70 Aligned_cols=144 Identities=38% Similarity=0.559 Sum_probs=130.7
Q ss_pred CHHHHHHHHCCCCCCHHHHHHHCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 88999998369658989999842461212667665477887458688645478776410468878998888888744334
Q gi|254780940|r 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETC 84 (227)
Q Consensus 5 ~~~~l~~~lgy~f~~~~ll~~A~th~S~~~~~~~~~erLEflGDavL~~~v~~~l~~~~p~~~eG~lt~lr~~lV~n~~L 84 (227)
++++++++|||+|+|++|+.+||||+||.... +||||||+||+||++++++++|.+||+.+||.+|.+|+.+|||++|
T Consensus 3 ~l~~~~~~lgy~f~~~~ll~~Alth~s~~~~~--~nerLe~lGdsil~~~v~~~l~~~~p~~~~~~l~~~r~~lv~n~~l 80 (148)
T 2nug_A 3 MLEQLEKKLGYTFKDKSLLEKALTHVSYSKKE--HYETLEFLGDALVNFFIVDLLVQYSPNKREGFLSPLKAYLISEEFF 80 (148)
T ss_dssp CHHHHHHHHTCCCSSHHHHHHHHBCTTTCSSS--CSHHHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHTSHHHH
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHH
T ss_conf 69999999798828889999986574768888--6289999899999887666655218971356688888998613048
Q ss_pred HHHHHHCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC--CCCHHHHHCCCCCCCCCCCCCCCCHHH
Q ss_conf 545431387720010366312375313333326699999999641554--220012210256431110001345258
Q gi|254780940|r 85 SQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQRALKSGKFRRDAKT 159 (227)
Q Consensus 85 a~~a~~lgl~~~l~~~~~~~~~~~~~~~~ilad~fEA~iGAiy~d~G~--~~~~~~i~~~~~~~~~~~~~~~~dpK~ 159 (227)
+.+|.++|++++++.+.+. .+++++||+|||+|||||+|+|+ +.++.|+.+++.+.+.. ..+||||
T Consensus 81 a~~a~~~gl~~~i~~~~~~------~~~k~lad~~eAliGAvy~d~g~~l~~v~~~i~~l~~~~l~~---~~~d~Kt 148 (148)
T 2nug_A 81 NLLAQKLELHKFIRIKRGK------INETIIGDVFEALWAAVYIDSGRDANFTRELFYKLFKEDILS---AIKEGRV 148 (148)
T ss_dssp HHHHHTTTGGGTCBSCTTC------CCHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHH---HHHTTCS
T ss_pred HHHHHHCCCCCCCHHHHHH------HCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH---HHHHCCC
T ss_conf 7887742774202245554------243222549999999998725853123367777656767666---5430102