Query gi|254780940|ref|YP_003065353.1| ribonuclease III [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 227
No_of_seqs 139 out of 3294
Neff 7.6
Searched_HMMs 33803
Date Wed Jun 1 20:44:20 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780940.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >2a11_A Ribonuclease III, RNAs 100.0 0 0 322.9 7.6 221 4-225 5-231 (242)
2 >3c4b_A Endoribonuclease dicer 100.0 3.9E-39 1.1E-43 260.4 8.9 146 4-149 13-193 (199)
3 >2nug_A Ribonuclease III, RNAs 100.0 6.5E-37 1.9E-41 246.7 9.0 144 5-159 3-148 (148)
4 >1o0w_A Ribonuclease III, RNAs 100.0 4.1E-37 1.2E-41 248.0 6.6 146 5-150 20-172 (177)
5 >2qvw_A GLP_546_48378_50642; d 100.0 2E-35 5.9E-40 237.6 1.4 134 6-149 15-148 (150)
6 >2gsl_A Hypothetical protein; 99.9 8E-28 2.4E-32 190.8 6.0 122 24-149 1-132 (137)
7 >2qvw_A GLP_546_48378_50642; d 99.9 1.5E-27 4.3E-32 189.2 7.1 108 37-149 4-112 (113)
8 >1u61_A Hypothetical protein; 99.9 4.4E-27 1.3E-31 186.3 4.5 115 34-149 6-132 (138)
9 >1o0w_A Ribonuclease III, RNAs 99.7 2.9E-16 8.5E-21 119.7 8.8 71 154-224 1-71 (75)
10 >2cpn_A TAR RNA-binding protei 99.6 6.6E-16 1.9E-20 117.5 8.5 76 149-225 10-85 (89)
11 >1uil_A Double-stranded RNA-bi 99.6 3.7E-16 1.1E-20 119.0 6.8 89 133-223 2-97 (113)
12 >2nug_A Ribonuclease III, RNAs 99.6 1.1E-15 3.2E-20 116.1 8.0 70 154-224 1-70 (73)
13 >1uhz_A Staufen (RNA binding p 99.6 2.2E-15 6.5E-20 114.2 9.3 74 152-226 3-76 (89)
14 >2yt4_A Protein DGCR8; DSRBD, 99.6 2.3E-15 6.7E-20 114.2 9.0 69 155-225 1-69 (83)
15 >1t4n_A Ribonuclease III; DSRB 99.6 6E-16 1.8E-20 117.7 5.8 74 151-225 2-75 (94)
16 >1t4o_A Ribonuclease III; RNT1 99.6 1E-15 3.1E-20 116.3 6.5 76 149-225 2-77 (117)
17 >1di2_A XLRBPA, double strande 99.6 2.7E-15 8.1E-20 113.7 8.0 67 157-224 2-68 (69)
18 >1x47_A DGCR8 protein; structu 99.6 8.3E-15 2.4E-19 110.7 9.1 74 149-224 10-83 (98)
19 >1x48_A Interferon-induced, do 99.6 9.8E-15 2.9E-19 110.3 8.4 70 153-224 4-73 (88)
20 >1whn_A Hypothetical protein r 99.6 7.6E-15 2.2E-19 110.9 7.6 87 129-226 8-95 (128)
21 >1x49_A Interferon-induced, do 99.6 5.6E-15 1.7E-19 111.7 6.1 75 150-225 9-83 (97)
22 >2dmy_A Spermatid perinuclear 99.5 2.7E-14 8.1E-19 107.5 9.2 73 150-225 11-83 (97)
23 >2dix_A Interferon-inducible d 99.5 2.2E-14 6.5E-19 108.1 7.3 72 151-224 4-75 (84)
24 >1qu6_A Protein kinase PKR; ds 99.5 1E-14 3.1E-19 110.1 4.8 74 150-224 8-81 (92)
25 >1whq_A RNA helicase A; double 99.5 4.8E-14 1.4E-18 106.0 6.3 71 152-224 3-74 (99)
26 >1ekz_A DSRBDIII, maternal eff 99.5 1.4E-14 4.1E-19 109.3 3.3 73 151-225 3-75 (76)
27 >1qu6_A Protein kinase PKR; ds 99.5 6.4E-14 1.9E-18 105.3 6.0 72 151-224 8-79 (87)
28 >2b7v_A Double-stranded RNA-sp 99.5 1.8E-13 5.2E-18 102.5 7.2 66 153-224 2-67 (71)
29 >2b7t_A Double-stranded RNA-sp 99.4 2.1E-13 6.3E-18 102.0 6.4 69 152-226 4-72 (73)
30 >2khx_A Ribonuclease 3; drosha 99.1 1.1E-10 3.2E-15 85.4 5.5 50 178-227 1-50 (57)
31 >3htx_A HEN1; HEN1, small RNA 97.6 0.00012 3.7E-09 48.1 5.1 69 154-226 16-96 (98)
32 >2yt4_A Protein DGCR8; DSRBD, 96.7 0.012 3.5E-07 35.9 8.1 68 155-224 26-93 (128)
33 >3c4b_A Endoribonuclease dicer 95.7 0.04 1.2E-06 32.6 6.6 61 156-224 2-63 (66)
34 >2kou_A Dicer-like protein 4; 94.4 0.18 5.4E-06 28.6 6.9 69 155-227 4-85 (102)
35 >2db2_A KIAA0890 protein; DSRM 93.6 0.12 3.7E-06 29.6 4.8 68 154-224 16-88 (119)
36 >1ztd_A Hypothetical protein P 83.8 3 8.9E-05 21.1 6.0 84 42-145 14-101 (133)
37 >3i1m_E 30S ribosomal protein 48.0 18 0.00054 16.3 4.9 41 183-223 27-71 (167)
38 >2vqe_E 30S ribosomal protein 41.4 23 0.00068 15.7 4.5 38 186-223 25-66 (143)
39 >3bbn_E Ribosomal protein S5; 31.6 33 0.00098 14.7 2.4 38 186-223 171-212 (220)
40 >2o3f_A Putative HTH-type tran 28.6 13 0.00039 17.1 -0.1 42 54-97 25-69 (111)
41 >1ais_A TBP, protein (tata-bin 28.6 37 0.0011 14.4 5.1 31 186-217 143-173 (182)
42 >3iwf_A Transcription regulato 26.4 19 0.00056 16.2 0.4 42 54-97 21-65 (74)
43 >2z8u_A Tata-box-binding prote 25.6 42 0.0012 14.1 5.3 29 186-215 147-175 (188)
44 >1rt8_A Fimbrin; filamentous a 25.5 33 0.00097 14.7 1.5 23 46-68 35-57 (61)
45 >1psw_A ADP-heptose LPS heptos 24.2 45 0.0013 13.9 2.2 49 43-99 8-57 (150)
46 >1mp9_A Tata-binding protein; 21.7 50 0.0015 13.6 4.3 39 186-225 147-187 (198)
47 >1vq2_A DCMP deaminase, deoxyc 21.6 50 0.0015 13.6 4.9 39 186-224 21-62 (137)
No 1
>>2a11_A Ribonuclease III, RNAse III; nuclease domain, structural genomics, PSI, protein structure initiative; 2.10A {Mycobacterium tuberculosis} (A:)
Probab=100.00 E-value=0 Score=322.93 Aligned_cols=221 Identities=30% Similarity=0.325 Sum_probs=189.7
Q ss_pred CCHHHHHHHHCCCCCCHHHHHHHCCCHHHCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf 58899999836965898999984246121266--7665477887458688645478776410468878998888888744
Q gi|254780940|r 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHS--YQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSA 81 (227)
Q Consensus 4 ~~~~~l~~~lgy~f~~~~ll~~A~th~S~~~~--~~~~~erLEflGDavL~~~v~~~l~~~~p~~~eG~lt~lr~~lV~n 81 (227)
-++..|+++|||+|+| +||.+||||+||... ...||||||||||+||+++|+.+||.+||++++|.||.+|+.+|+|
T Consensus 5 ~~~~~~~~~l~~~f~~-~ll~~alth~S~~~~~~~~~~~erLe~lGd~vl~~~i~~~l~~~~p~~~~~~l~~~r~~lv~n 83 (242)
T 2a11_A 5 RSRQPLLDALGVDLPD-ELLSLALTHRSYAYENGGLPTNERLEFLGDAVLGLTITDALFHRHPDRSEGDLAKLRASVVNT 83 (242)
T ss_dssp CCCHHHHHHHTSCCCH-HHHHHHTBCHHHHHHTTSCCCTHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHSH
T ss_pred HHHHHHHHHHCCCCCH-HHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 5399999996898798-999971278474244788874288988889999999999988750357689999999998615
Q ss_pred HHHHHHHHHCCCCCEEEECC---CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCCCCCCCC-CCCH
Q ss_conf 33454543138772001036---6312375313333326699999999641554220012210256431110001-3452
Q gi|254780940|r 82 ETCSQVARELDLASFIRVSS---DLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF-RRDA 157 (227)
Q Consensus 82 ~~La~~a~~lgl~~~l~~~~---~~~~~~~~~~~~ilad~fEA~iGAiy~d~G~~~~~~~i~~~~~~~~~~~~~~-~~dp 157 (227)
++|+.+|..+|+..++.... +........++++++|+|||++||+|+|.|++.+..|+...+.+........ ..++
T Consensus 84 ~~la~~a~~~gl~~~~~~~~~~~~~~~~~~~~~~k~~ad~~ea~~ga~~~d~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (242)
T 2a11_A 84 QALADVARRLCAEGLGVHVLLGRGEANTGGADKSSILADGMESLLGAIYLQHGMEKAREVILRLFGPLLDAAPTLGAGLD 163 (242)
T ss_dssp HHHHHHHHHHSSSCSGGGCBCCHHHHHTTGGGCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTHHHHHHTTC------
T ss_pred HHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCC
T ss_conf 78999999818554551666047300158754154999999999999861434432100001200011211111012478
Q ss_pred HHHHHHHHHCCCCCCCCCCEECCCCCCCCCEEEEEEEECCEEEEEEEECCHHHHHHHHHHHHHHHCCC
Q ss_conf 58898753202233334310102077888459999999998999999689899999999999997488
Q gi|254780940|r 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 (227)
Q Consensus 158 K~~Lqe~~q~~~~~~P~Y~~~~~~g~~~~~~f~v~v~v~g~~~g~g~g~SkK~Ae~~AA~~AL~klgi 225 (227)
...++++++......|.|..+.+.||+|.+.|.|+|+++|..+++|.|+|||+|++.||++||++|.-
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~v~i~g~~~~~g~g~skk~Ak~~AA~~AL~~l~~ 231 (242)
T 2a11_A 164 WKTSLQELTAARGLGAPSYLVTSTGPDHDKEFTAVVVVMDSEYGSGVGRSKKEAEQKAAAAAWKALEV 231 (242)
T ss_dssp --------------------------------------------------------------------
T ss_pred HHHHHHHHHHHCCCCCCEEEEEEEECCCCCEEEEEEEECCEEEEEEEECCHHHHHHCCCHHHHHHHHH
T ss_conf 68899998763036898699998856999849999999996999998689999973801769999986
No 2
>>3c4b_A Endoribonuclease dicer; RNAse, dsRNA binding protein, ATP-binding, endonuclease, helicase, hydrolase, nucleotide-binding, phosphoprotein; HET: MSE; 1.68A {Mus musculus} PDB: 3c4t_A 2eb1_A (A:1-199)
Probab=100.00 E-value=3.9e-39 Score=260.41 Aligned_cols=146 Identities=29% Similarity=0.415 Sum_probs=131.0
Q ss_pred CCHHHHHHHHCCCCCCHHHHHHHCCCHHHCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Q ss_conf 58899999836965898999984246121266-76654778874586886454787764104688789988888887443
Q gi|254780940|r 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHS-YQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82 (227)
Q Consensus 4 ~~~~~l~~~lgy~f~~~~ll~~A~th~S~~~~-~~~~~erLEflGDavL~~~v~~~l~~~~p~~~eG~lt~lr~~lV~n~ 82 (227)
..+..|+++|||+|+|++||.+||||+|+... ...+|||||||||+||+++|+++||.+||+++||.||.+|+.+|||+
T Consensus 13 ~~l~~l~~~lgy~f~~~~ll~~AlTh~S~~~~~~~~~~erLEfLGDavL~~~vs~~l~~~~p~~~~g~lt~~r~~~v~n~ 92 (199)
T 3c4b_A 13 SGFETFEKKINYRFKNKAYLLQAFTHASYHYNTITDXYQRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNT 92 (199)
T ss_dssp TTHHHHHHHHTCCCSSHHHHHHHHBCTTCTTCCSSCCSHHHHHHHHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHSSHH
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHH
T ss_conf 99999999969872898999998436051436776514889999999999999999986412476788999999973399
Q ss_pred HHHHHHHHCCCCCEEEECCCCCC--------------------------------CCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 34545431387720010366312--------------------------------3753133333266999999996415
Q gi|254780940|r 83 TCSQVARELDLASFIRVSSDLRK--------------------------------DVCSFMTSIQADVVESLIAALYLDG 130 (227)
Q Consensus 83 ~La~~a~~lgl~~~l~~~~~~~~--------------------------------~~~~~~~~ilad~fEA~iGAiy~d~ 130 (227)
+|+.+|.++||++|+++++.+.. ......+|++||+|||+|||||+|+
T Consensus 93 ~La~~a~~~gL~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~laD~~EA~iGAiy~d~ 172 (199)
T 3c4b_A 93 IFASLAVKYDYHKYFKAVSPELFHVIDDFVKFQLEKNEXQGXDSELRRSEEDEEKEEDIEVPKAXGDIFESLAGAIYXDS 172 (199)
T ss_dssp HHHHHHHHTTGGGTCBCCCHHHHHHHHHHHHHHHHHHC------------------CCSCCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCC
T ss_conf 99999998694899985683765446667766554310012113432011034440565442088899999999998607
Q ss_pred C--CCCCHHHHHCCCCCCCCC
Q ss_conf 5--422001221025643111
Q gi|254780940|r 131 G--IEVAGTFVDKYWKQRALK 149 (227)
Q Consensus 131 G--~~~~~~~i~~~~~~~~~~ 149 (227)
| +++|+.|+.+++.+....
T Consensus 173 g~~~~~~~~~~~~~~~~~~~~ 193 (199)
T 3c4b_A 173 GXSLEVVWQVYYPXXQPLIEK 193 (199)
T ss_dssp TSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHCCCCHHHHHHHH
T ss_conf 876442101021066654323
No 3
>>2nug_A Ribonuclease III, RNAse III; dsRNA, RNA interference, endonucleolytic cleavage, hydrolase/RNA complex; 1.70A {Aquifex aeolicus} (A:1-148)
Probab=100.00 E-value=6.5e-37 Score=246.70 Aligned_cols=144 Identities=38% Similarity=0.559 Sum_probs=130.7
Q ss_pred CHHHHHHHHCCCCCCHHHHHHHCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 88999998369658989999842461212667665477887458688645478776410468878998888888744334
Q gi|254780940|r 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETC 84 (227)
Q Consensus 5 ~~~~l~~~lgy~f~~~~ll~~A~th~S~~~~~~~~~erLEflGDavL~~~v~~~l~~~~p~~~eG~lt~lr~~lV~n~~L 84 (227)
++++++++|||+|+|++|+.+||||+||.... +||||||+||+||++++++++|.+||+.+||.+|.+|+.+|||++|
T Consensus 3 ~l~~~~~~lgy~f~~~~ll~~Alth~s~~~~~--~nerLe~lGdsil~~~v~~~l~~~~p~~~~~~l~~~r~~lv~n~~l 80 (148)
T 2nug_A 3 MLEQLEKKLGYTFKDKSLLEKALTHVSYSKKE--HYETLEFLGDALVNFFIVDLLVQYSPNKREGFLSPLKAYLISEEFF 80 (148)
T ss_dssp CHHHHHHHHTCCCSSHHHHHHHHBCTTTCSSS--CSHHHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHTSHHHH
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHH
T ss_conf 69999999798828889999986574768888--6289999899999887666655218971356688888998613048
Q ss_pred HHHHHHCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC--CCCHHHHHCCCCCCCCCCCCCCCCHHH
Q ss_conf 545431387720010366312375313333326699999999641554--220012210256431110001345258
Q gi|254780940|r 85 SQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQRALKSGKFRRDAKT 159 (227)
Q Consensus 85 a~~a~~lgl~~~l~~~~~~~~~~~~~~~~ilad~fEA~iGAiy~d~G~--~~~~~~i~~~~~~~~~~~~~~~~dpK~ 159 (227)
+.+|.++|++++++.+.+. .+++++||+|||+|||||+|+|+ +.++.|+.+++.+.+.. ..+||||
T Consensus 81 a~~a~~~gl~~~i~~~~~~------~~~k~lad~~eAliGAvy~d~g~~l~~v~~~i~~l~~~~l~~---~~~d~Kt 148 (148)
T 2nug_A 81 NLLAQKLELHKFIRIKRGK------INETIIGDVFEALWAAVYIDSGRDANFTRELFYKLFKEDILS---AIKEGRV 148 (148)
T ss_dssp HHHHHTTTGGGTCBSCTTC------CCHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHH---HHHTTCS
T ss_pred HHHHHHCCCCCCCHHHHHH------HCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH---HHHHCCC
T ss_conf 7887742774202245554------243222549999999998725853123367777656767666---5430102
No 4
>>1o0w_A Ribonuclease III, RNAse III; TM1102, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.00A {Thermotoga maritima} (A:1-177)
Probab=100.00 E-value=4.1e-37 Score=247.97 Aligned_cols=146 Identities=32% Similarity=0.458 Sum_probs=135.7
Q ss_pred CHHHHHHHHCCCCCCHHHHHHHCCCHHHCC-------CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 889999983696589899998424612126-------6766547788745868864547877641046887899888888
Q gi|254780940|r 5 RYSTLEKRIGYAFANRSLLEKALTHSSISH-------SYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77 (227)
Q Consensus 5 ~~~~l~~~lgy~f~~~~ll~~A~th~S~~~-------~~~~~~erLEflGDavL~~~v~~~l~~~~p~~~eG~lt~lr~~ 77 (227)
.+..++++|||+|+|++|+.+||||+||.+ ....+|||||||||+||+++++++||.+||+.++|.+|.+|+.
T Consensus 20 ~l~~l~~~lg~~f~~~~Ll~~AlTh~S~~~~~~~~~~~~~~~nerLe~lGd~vl~~~~~~~l~~~~p~~~~~~l~~l~~~ 99 (177)
T 1o0w_A 20 IVEEFQKETGINFKNEELLFRALCHSSYANEQNQAGRKDVESNEKLEFLGDAVLELFVCEILYKKYPEAEVGDLARVKSA 99 (177)
T ss_dssp HHHHHHHHHCCCCSSHHHHHHHHBCHHHHHHHHHTTCTTCCCSHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
T ss_conf 99999999698539889999980471513334343346775578999999999999999999984888774111999999
Q ss_pred HHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCCCCC
Q ss_conf 8744334545431387720010366312375313333326699999999641554220012210256431110
Q gi|254780940|r 78 LVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKS 150 (227)
Q Consensus 78 lV~n~~La~~a~~lgl~~~l~~~~~~~~~~~~~~~~ilad~fEA~iGAiy~d~G~~~~~~~i~~~~~~~~~~~ 150 (227)
+|||++|+.+|..+||+++++.++++.......+++++||+|||+|||||+|+|++.++.|+.+++.+.+...
T Consensus 100 lvsn~~La~~a~~~~l~~~i~~~~~~~~~~~~~~~k~lad~~eAliGAiyld~G~~~~~~~i~~~~~~~l~~~ 172 (177)
T 1o0w_A 100 AASEEVLAMVSRKMNLGKFLFLGKGEEKTGGRDRDSILADAFEALLAAIYLDQGYEKIKELFEQEFEFYIEKI 172 (177)
T ss_dssp HTSHHHHHHHHHHTTHHHHCBCCHHHHHTTGGGCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHEECCHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
T ss_conf 8555579999998777777112682776599775307778999999999970780776999999999999887
No 5
>>2qvw_A GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral twin, hydrolase; 3.00A {Giardia intestinalis} PDB: 2ffl_A (A:607-756)
Probab=100.00 E-value=2e-35 Score=237.55 Aligned_cols=134 Identities=22% Similarity=0.218 Sum_probs=122.7
Q ss_pred HHHHHHHHCCCCCCHHHHHHHCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 89999983696589899998424612126676654778874586886454787764104688789988888887443345
Q gi|254780940|r 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCS 85 (227)
Q Consensus 6 ~~~l~~~lgy~f~~~~ll~~A~th~S~~~~~~~~~erLEflGDavL~~~v~~~l~~~~p~~~eG~lt~lr~~lV~n~~La 85 (227)
+.+++++|||+|+|++|+.+||||+ +|||||||||+||++++++|||.+||+.+||.+|.+|+.+|||++|+
T Consensus 15 ~~~~~~~lg~~f~~~~Ll~~Alth~--------syerLe~lGD~vl~~~~~~~l~~~~p~~~~g~ls~lr~~lvsn~~l~ 86 (150)
T 2qvw_A 15 SLAVPIPSGTIPFLIRLLQIALTPH--------VYQKLELLGDAFLKCSLALHLHALHPTLTEGALTRMRQSAETNSVLG 86 (150)
T ss_dssp TTCSCCCSSCHHHHHHHHHHHHSTG--------GGHHHHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHTTSHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHCCHH--------HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHH
T ss_conf 2420268886089999999852889--------99999987889987678877750497401578999886311120787
Q ss_pred HHHHHCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCCCC
Q ss_conf 4543138772001036631237531333332669999999964155422001221025643111
Q gi|254780940|r 86 QVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK 149 (227)
Q Consensus 86 ~~a~~lgl~~~l~~~~~~~~~~~~~~~~ilad~fEA~iGAiy~d~G~~~~~~~i~~~~~~~~~~ 149 (227)
++|.++|++++++.++... ....++++++|+|||+|||||+|+|++.++.|+.++|.+.+.+
T Consensus 87 ~~a~~lgl~~~~~~~~~~~--~~~~~~k~lad~fEAliGAiy~d~g~~~~~~~i~~l~~~~l~~ 148 (150)
T 2qvw_A 87 RLTKRFPSVVSEVIIESHP--KIQPDSKVYGDTFEAILAAILLACGEEAAGAFVREHVLPQVVA 148 (150)
T ss_dssp HHHHTSCTHHHHHHHHHST--TCCTTCSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTGGGCCC
T ss_pred HHHHHCCCHHHHHHHHCCC--CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEC
T ss_conf 8753077078888761289--9898751102169999999999712577888999752351013
No 6
>>2gsl_A Hypothetical protein; alpha-helical protein, structural genomics, PSI, protein structure initiative; 2.60A {Fusobacterium nucleatum subsp} (A:)
Probab=99.94 E-value=8e-28 Score=190.78 Aligned_cols=122 Identities=19% Similarity=0.124 Sum_probs=103.9
Q ss_pred HHHCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEC---
Q ss_conf 98424612126676654778874586886454787764104688789988888887443345454313877200103---
Q gi|254780940|r 24 EKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVS--- 100 (227)
Q Consensus 24 ~~A~th~S~~~~~~~~~erLEflGDavL~~~v~~~l~~~~p~~~eG~lt~lr~~lV~n~~La~~a~~lgl~~~l~~~--- 100 (227)
.+||||+|+... .||||||||||+||+++|+.+|| +|+.++|.+|.+|+.+|||++|+.+|.++|+..++...
T Consensus 1 ~EAlt~~s~~~~--~~~erLefLGDavl~~~v~~~l~--~~~~~~~~l~~~r~~lvsn~~La~~a~~l~l~~~~~~~~~~ 76 (137)
T 2gsl_A 1 XDNVDFSKDIRD--YSGLELAFLGDAIWELEIRKYYL--QFGYNIPTLNKYVKAKVNAKYQSLIYKKIINDLDEEFKVIG 76 (137)
T ss_dssp ----CCCCTTTS--CCHHHHHHHHHHHHHHHHHHHHT--TSCBCHHHHHHHHHHHHSHHHHHHHHHHHGGGSCHHHHHHH
T ss_pred CCCCCCCCCHHH--HCHHHHHHHHHHHHHHHHHHHHH--CCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 997323528777--29035677829999999999986--38998668999999993999999999998886414389997
Q ss_pred ---CCCCCCC----CCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCCCC
Q ss_conf ---6631237----531333332669999999964155422001221025643111
Q gi|254780940|r 101 ---SDLRKDV----CSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK 149 (227)
Q Consensus 101 ---~~~~~~~----~~~~~~ilad~fEA~iGAiy~d~G~~~~~~~i~~~~~~~~~~ 149 (227)
..+.... ....+|.+||+|||+|||+|+|+|++.++.|+..++.+.+..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~K~lad~~EAliGAiyld~g~~~~~~~~~~l~~p~~~~ 132 (137)
T 2gsl_A 77 KRAKNSNIKTFPRSCTVXEYKEATALEAIIGAXYLLKKEEEIKKIINIVIKGELEH 132 (137)
T ss_dssp HHHHC--CCSCCSSSCHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC--
T ss_pred HCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_conf 15102568865567861488998899999999998388999999999999876422
No 7
>>2qvw_A GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral twin, hydrolase; 3.00A {Giardia intestinalis} PDB: 2ffl_A (A:328-440)
Probab=99.94 E-value=1.5e-27 Score=189.18 Aligned_cols=108 Identities=25% Similarity=0.392 Sum_probs=99.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCH
Q ss_conf 66547788745868864547877641046887899888888874433454543138772001036631237531333332
Q gi|254780940|r 37 QESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 (227)
Q Consensus 37 ~~~~erLEflGDavL~~~v~~~l~~~~p~~~eG~lt~lr~~lV~n~~La~~a~~lgl~~~l~~~~~~~~~~~~~~~~ila 116 (227)
..+|||||||||+||++++++++|.+||+.+||.||.+|+.+|||++|+.+|.++||+++++.+++.. .+++++|
T Consensus 4 ~~~nerLefLGDail~~~~~~~l~~~~p~~~~~~l~~l~~~lvsn~~la~~a~~~gl~~~i~~~~~~~-----~~~k~la 78 (113)
T 2qvw_A 4 TDVFQRLELLGDAVLGFIVTARLLCLFPDASVGTLVELKMELVRNEALNYLVQTLGLPQLAEFSNNLV-----AKSKTWA 78 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHSHHHHHHHHHHTTCTTTCBCCSCC-------CCCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH-----HHCCCHH
T ss_conf 77999998764567788988678742678641339999999998788999999708468999987777-----6124089
Q ss_pred HHHHHHHHHHHHCC-CCCCCHHHHHCCCCCCCCC
Q ss_conf 66999999996415-5422001221025643111
Q gi|254780940|r 117 DVVESLIAALYLDG-GIEVAGTFVDKYWKQRALK 149 (227)
Q Consensus 117 d~fEA~iGAiy~d~-G~~~~~~~i~~~~~~~~~~ 149 (227)
|+|||+|||||+|+ |++.++.|+.++|.++.++
T Consensus 79 d~feAliGAiyld~~g~~~~~~~~~~~~~~~~~~ 112 (113)
T 2qvw_A 79 DMYEEIVGSIFTGPNGIYGCEEFLAKTLMSPEHS 112 (113)
T ss_dssp HHHHHHHHHHHHSTTHHHHHHHHHHHHHBCGGGS
T ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCC
T ss_conf 9999976412038875322999999870592203
No 8
>>1u61_A Hypothetical protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 2.15A {Bacillus cereus} (A:)
Probab=99.93 E-value=4.4e-27 Score=186.26 Aligned_cols=115 Identities=19% Similarity=0.117 Sum_probs=100.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCC---------
Q ss_conf 66766547788745868864547877641046887899888888874433454543138772001036631---------
Q gi|254780940|r 34 HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLR--------- 104 (227)
Q Consensus 34 ~~~~~~~erLEflGDavL~~~v~~~l~~~~p~~~eG~lt~lr~~lV~n~~La~~a~~lgl~~~l~~~~~~~--------- 104 (227)
.....|||||||||||||+++++.+||. +|+.+||.||.+|+.+|||++|+.+|.++||++|++.++.+.
T Consensus 6 ~~~~~~~erLEflGDavL~~~i~~~l~~-~p~~~~g~l~~~r~~~V~n~~La~~a~~~~l~~~l~~~~~~~~~~~~~~~~ 84 (138)
T 1u61_A 6 DAKQLNSLALAYXGDAVYEQYIRYHLLQ-KGKVRPNQLHRLGTSFVSAKAQAKVVYHLLETAFLTEEEEAVLRRGRNANS 84 (138)
T ss_dssp CTTTSCHHHHHHHHHHHHHHHHHHHHHH-HCCSCGGGHHHHHHHHHSHHHHHHHHHHHHHTTCSCHHHHHHHHHHTCCCS
T ss_pred CHHHCCHHHHHHHHHHHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHCHHHHHHHHHHCCCHHHHHCCHHHHHCCCCCCCC
T ss_conf 7766191555666399999999999998-289983079999999905999999999847645543022577627766556
Q ss_pred ---CCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCCCC
Q ss_conf ---237531333332669999999964155422001221025643111
Q gi|254780940|r 105 ---KDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK 149 (227)
Q Consensus 105 ---~~~~~~~~~ilad~fEA~iGAiy~d~G~~~~~~~i~~~~~~~~~~ 149 (227)
.......++++||+|||+|||||+|+|++.++.|+.++|.+.+..
T Consensus 85 ~~~~~~~~~~~k~~ad~~EAliGAiyld~g~~~~~~~~~~l~~~~~~~ 132 (138)
T 1u61_A 85 GTVPKNTDVQTYRHSTAFEALIGYHHLLNNRERLDEIVYKAIAVLEEQ 132 (138)
T ss_dssp SCCCTTCCHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCC
T ss_conf 655557633688998899999999999167999999999999999741
No 9
>>1o0w_A Ribonuclease III, RNAse III; TM1102, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.00A {Thermotoga maritima} (A:178-252)
Probab=99.67 E-value=2.9e-16 Score=119.69 Aligned_cols=71 Identities=32% Similarity=0.335 Sum_probs=68.1
Q ss_pred CCCHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCEEEEEEEECCEEEEEEEECCHHHHHHHHHHHHHHHCC
Q ss_conf 34525889875320223333431010207788845999999999899999968989999999999999748
Q gi|254780940|r 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 (227)
Q Consensus 154 ~~dpK~~Lqe~~q~~~~~~P~Y~~~~~~g~~~~~~f~v~v~v~g~~~g~g~g~SkK~Ae~~AA~~AL~klg 224 (227)
.+|||+.|+||||+.+...|.|.+++.+||+|.+.|+|.|+++|..+++|.|+|||+||+.||+.||..|.
T Consensus 1 ~~n~ks~L~e~~q~~~~~~p~y~~~~~~g~~h~~~F~~~v~i~g~~~~~g~g~sKK~Aeq~AA~~al~~L~ 71 (75)
T 1o0w_A 1 LFDYKTALQEIVQSEHKVPPEYILVRTEKNDGDRIFVVEVRVNGKTIATGKGRTKKEAEKEAARIAYEKLL 71 (75)
T ss_dssp CSCHHHHHHHHHHHHHSSCCEEEEEEEECCTTSCEEEEEEEETTEEEEEEEESSHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCCCEEEEEEECCEEEEEEEECCHHHHHHHHHHHHHHHHH
T ss_conf 16753411687775305788558874206999941899999999999998848999999999999999998
No 10
>>2cpn_A TAR RNA-binding protein 2; double-stranded RNA binding domain, DSRBD, DSRM., structural genomics, NPPSFA; NMR {Homo sapiens} (A:)
Probab=99.64 E-value=6.6e-16 Score=117.46 Aligned_cols=76 Identities=32% Similarity=0.339 Sum_probs=70.1
Q ss_pred CCCCCCCCHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCEEEEEEEECCEEEEEEEECCHHHHHHHHHHHHHHHCCC
Q ss_conf 10001345258898753202233334310102077888459999999998999999689899999999999997488
Q gi|254780940|r 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 (227)
Q Consensus 149 ~~~~~~~dpK~~Lqe~~q~~~~~~P~Y~~~~~~g~~~~~~f~v~v~v~g~~~g~g~g~SkK~Ae~~AA~~AL~klgi 225 (227)
.......|||+.||||||+.+...|.|++++++||+|++.|+|.|.++|+. ++|.|+|||+|++.||+.||.+|+.
T Consensus 10 ~~~~~~~n~ks~L~E~~qk~~~~~P~Y~~~~~~g~~~~~~F~~~v~v~~~~-~~G~g~sKK~A~~~AA~~aL~~L~~ 85 (89)
T 2cpn_A 10 SPQQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFI-EIGSGTSKKLAKRNAAAKMLLRVSG 85 (89)
T ss_dssp CCCCCCCCHHHHHHHHHHHHTCCCCEEEEEEEECCSSSCEEEEEEEETTEE-EEEEESSHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHEEEEEEECCCC-CCCCCCCHHHHHHHHHHHHHHHHHC
T ss_conf 987678885899999999829999804432023687421100222212311-4466440999999999999999827
No 11
>>1uil_A Double-stranded RNA-binding motif; structural genomics, DSRM, riken structural genomics/proteomics initiative, RSGI RNA binding protein; NMR {Mus musculus} (A:)
Probab=99.64 E-value=3.7e-16 Score=119.03 Aligned_cols=89 Identities=20% Similarity=0.208 Sum_probs=77.2
Q ss_pred CCCHHHHHCCCCCCCCC--CCCCCCCHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCEEEEEEEE-----CCEEEEEEEE
Q ss_conf 22001221025643111--0001345258898753202233334310102077888459999999-----9989999996
Q gi|254780940|r 133 EVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI-----SGLAPAQGMD 205 (227)
Q Consensus 133 ~~~~~~i~~~~~~~~~~--~~~~~~dpK~~Lqe~~q~~~~~~P~Y~~~~~~g~~~~~~f~v~v~v-----~g~~~g~g~g 205 (227)
+.|+.|+..++.+.... ......|||+.||||||+.+. +|+|++. ++||+|+++|+|.|++ ++..+|+|.|
T Consensus 2 E~a~~~l~~~~~~~~~~~~~~~~~~n~ks~L~e~~q~~~~-~p~Y~~~-e~g~~h~~~F~~~v~i~~~~~~~~~~g~G~g 79 (113)
T 1uil_A 2 SSGSSGLESEEVDLNAGLHGNWTLENAKARLNQYFQKEKI-QGEYKYT-QVGPDHNRSFIAEMTIYIKQLGRRIFAREHG 79 (113)
T ss_dssp CCCCCCCCCCCCCSSHHHHCCCCHHHHHHHHHHHHHHSCC-CCCCEEE-EESCSTTCEEEEEEEEEETTTTEEEEEECCC
T ss_pred CCCCCCCCHHHCCHHHHCCCCCEECCHHHHHHHHHHHCCC-CCCEEEE-EECCCCCCEEEEEEEEEEECCCCEEEEEECC
T ss_conf 8753441013324100205886203899999999996699-9976997-6425789839999999740468568988552
Q ss_pred CCHHHHHHHHHHHHHHHC
Q ss_conf 898999999999999974
Q gi|254780940|r 206 CSKRAAEQVAAAEVLKRE 223 (227)
Q Consensus 206 ~SkK~Ae~~AA~~AL~kl 223 (227)
+|||+|++.||+.||+.|
T Consensus 80 ~sKK~Ak~~AA~~al~~L 97 (113)
T 1uil_A 80 SNKKLAAQSCALSLVRQL 97 (113)
T ss_dssp SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHH
T ss_conf 079999999999999999
No 12
>>2nug_A Ribonuclease III, RNAse III; dsRNA, RNA interference, endonucleolytic cleavage, hydrolase/RNA complex; 1.70A {Aquifex aeolicus} (A:149-221)
Probab=99.62 E-value=1.1e-15 Score=116.10 Aligned_cols=70 Identities=36% Similarity=0.493 Sum_probs=66.5
Q ss_pred CCCHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCEEEEEEEECCEEEEEEEECCHHHHHHHHHHHHHHHCC
Q ss_conf 34525889875320223333431010207788845999999999899999968989999999999999748
Q gi|254780940|r 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 (227)
Q Consensus 154 ~~dpK~~Lqe~~q~~~~~~P~Y~~~~~~g~~~~~~f~v~v~v~g~~~g~g~g~SkK~Ae~~AA~~AL~klg 224 (227)
.+|||+.||||||+.+...|.|.++..+||+|.+.|+|.|.++|.. ++|.|+|||+|++.||+.||++|.
T Consensus 1 ~kn~ks~L~E~~qk~~~~~p~y~~~~~~g~~~~~~F~~~v~v~~~~-~~g~g~sKK~Ak~~AA~~al~~L~ 70 (73)
T 2nug_A 1 KKDYKTILQEITQKRWKERPEYRLISVEGPHHKKKFIVEAKIKEYR-TLGEGKSKKEAEQRAAEELIKLLE 70 (73)
T ss_dssp CCCHHHHHHHHHHHHHSCCCEEEEEEEESCGGGCEEEEEEEETTEE-EEEEESSHHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCEEEEEEEECCEE-EEEEECCHHHHHHHHHHHHHHHHH
T ss_conf 3636658999998628999700110222478996499999989989-999979999999999999999975
No 13
>>1uhz_A Staufen (RNA binding protein) homolog 2; DSRM, staufen homolog 2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} (A:)
Probab=99.62 E-value=2.2e-15 Score=114.22 Aligned_cols=74 Identities=20% Similarity=0.238 Sum_probs=68.9
Q ss_pred CCCCCHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCEEEEEEEECCEEEEEEEECCHHHHHHHHHHHHHHHCCCC
Q ss_conf 013452588987532022333343101020778884599999999989999996898999999999999974889
Q gi|254780940|r 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 (227)
Q Consensus 152 ~~~~dpK~~Lqe~~q~~~~~~P~Y~~~~~~g~~~~~~f~v~v~v~g~~~g~g~g~SkK~Ae~~AA~~AL~klgi~ 226 (227)
....|||+.||||||+.+...|.|+++.+.||+|++.|+|.|.|++.. ++|.|+|||+|++.||+.||..|+..
T Consensus 3 ~~~~n~ks~L~e~~qk~~~~~P~y~~~~~~g~~~~~~F~~~v~v~~~~-~~g~g~sKK~A~~~AA~~al~~L~~~ 76 (89)
T 1uhz_A 3 SGSSGPISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKVGNEV-ATGTGPNKKIAKKNAAEAMLLQLGYK 76 (89)
T ss_dssp CSSSCHHHHHHHHHHHTTSCCCEEEEEEEESCSTTCEEEEEEEETTEE-EEEEESSHHHHHHHHHHHHHHHHTSS
T ss_pred CCCCCHHHHHHHHHHHCCCCCCEEECCEEECCCCCEEEEEEEEEEEEE-CCCCHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 888881999999999749999978214043367750699999996553-12311578999999999999995789
No 14
>>2yt4_A Protein DGCR8; DSRBD, RNA binding domain, RNA binding protein; 2.60A {Homo sapiens} (A:22-104)
Probab=99.62 E-value=2.3e-15 Score=114.17 Aligned_cols=69 Identities=23% Similarity=0.269 Sum_probs=64.7
Q ss_pred CCHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCEEEEEEEECCEEEEEEEECCHHHHHHHHHHHHHHHCCC
Q ss_conf 45258898753202233334310102077888459999999998999999689899999999999997488
Q gi|254780940|r 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 (227)
Q Consensus 155 ~dpK~~Lqe~~q~~~~~~P~Y~~~~~~g~~~~~~f~v~v~v~g~~~g~g~g~SkK~Ae~~AA~~AL~klgi 225 (227)
+|||+.||||||+.+..+|.|.+. +||+|.++|.|.|+++|..++.|.|+|||+||+.||+.||.+|.-
T Consensus 1 kn~ks~L~e~~qk~~~~~p~y~~~--~g~~h~~~F~~~v~i~g~~~~~g~g~sKK~Ak~~AA~~al~~L~~ 69 (83)
T 2yt4_A 1 KSEVCILHEYMQRVLKVRPVYNFF--ECENPSEPFGASVTIDGVTYGSGTASSKKLAKNKAARATLEILIP 69 (83)
T ss_dssp SCHHHHHHHHHHHTTCCCCEEEEE--ECSCTTSCEEEEEEETTEEEEEEEESSHHHHHHHHHHHHHHHHST
T ss_pred CCHHHHHHHHHHHCCCCCCEEEEE--ECCCCCCCEEEEEEECCEEEECCCCCCHHHHHHHHHHHHHHHHCC
T ss_conf 898899999999759999849998--566999998999999998971688786799999999999998553
No 15
>>1t4n_A Ribonuclease III; DSRBD, RNA-binding, hydrolase; NMR {Saccharomyces cerevisiae} (A:)
Probab=99.61 E-value=6e-16 Score=117.69 Aligned_cols=74 Identities=15% Similarity=0.063 Sum_probs=68.3
Q ss_pred CCCCCCHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCEEEEEEEECCEEEEEEEECCHHHHHHHHHHHHHHHCCC
Q ss_conf 001345258898753202233334310102077888459999999998999999689899999999999997488
Q gi|254780940|r 151 GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 (227)
Q Consensus 151 ~~~~~dpK~~Lqe~~q~~~~~~P~Y~~~~~~g~~~~~~f~v~v~v~g~~~g~g~g~SkK~Ae~~AA~~AL~klgi 225 (227)
++...|||+.||||||+.+.. |.|..+..+||+|++.|+|.|+++|..++.|+|+|||+|++.||+.||+.|+.
T Consensus 2 ~~~~~n~ks~L~e~~qk~~~~-~~y~~~~~~g~~h~~~F~~~v~i~g~~~~~g~g~sKK~Ak~~AA~~al~~L~~ 75 (94)
T 1t4n_A 2 DKLDMNAKRQLYSLIGYASLR-LHYVTVKKPTAVDPNSIVECRVGDGTVLGTGVGRNIKIAGIRAAENALRDKKM 75 (94)
T ss_dssp CSSCHHHHHHHHHHTCSSSSC-CEEEECCCCSSSCCSEEEEEECSSSCEEEEEEESSHHHHHHHHHHHHHHCHHH
T ss_pred CCCCCCHHHHHHHHHHHCCCC-CCCEECCCCCCCCCCEEEEEEECCCEEEEECCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 734368999999999856999-98000225899888578999971880787424415889999999999971178
No 16
>>1t4o_A Ribonuclease III; RNT1P, DSRBD, RNA-binding, hydrolase; 2.50A {Saccharomyces cerevisiae} (A:)
Probab=99.61 E-value=1e-15 Score=116.25 Aligned_cols=76 Identities=16% Similarity=0.082 Sum_probs=69.5
Q ss_pred CCCCCCCCHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCEEEEEEEECCEEEEEEEECCHHHHHHHHHHHHHHHCCC
Q ss_conf 10001345258898753202233334310102077888459999999998999999689899999999999997488
Q gi|254780940|r 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 (227)
Q Consensus 149 ~~~~~~~dpK~~Lqe~~q~~~~~~P~Y~~~~~~g~~~~~~f~v~v~v~g~~~g~g~g~SkK~Ae~~AA~~AL~klgi 225 (227)
+.+....|||+.||||||+++.. |.|+++..+||+|.+.|+|.|.++|..+++|.|+|||+|++.||..||++|+.
T Consensus 2 ~~~~~~~n~k~~L~e~~qk~~~~-~~y~~~~~~g~~h~~~F~~~v~i~g~~~~~G~g~sKK~Ak~~AA~~aL~~L~~ 77 (117)
T 1t4o_A 2 KTDKLDMNAKRQLYSLIGYASLR-LHYVTVKKPTAVDPNSIVECRVGDGTVLGTGVGRNIKIAGIRAAENALRDKKM 77 (117)
T ss_dssp -CCCCCTTHHHHHHHHHCCGGGC-CEEEEEECCCSSCCCEEEEEECTTCCEEEEEEESSHHHHHHHHHHHHHHCHHH
T ss_pred CCCCCCCCHHHHHHHHHHHCCCC-CEEEECCCCCCCCCCEEEEEEEEEEEEEEECCCCCHHHHHHHHHHHHHHCCHH
T ss_conf 86547868999999999628998-57897436777787469999998557887547788999999999999976267
No 17
>>1di2_A XLRBPA, double stranded RNA binding protein A; protein-RNA complex, protein-RNA interactions, RNA-bining protein; 1.90A {Xenopus laevis} (A:)
Probab=99.60 E-value=2.7e-15 Score=113.67 Aligned_cols=67 Identities=34% Similarity=0.439 Sum_probs=63.9
Q ss_pred HHHHHHHHHHCCCCCCCCCCEECCCCCCCCCEEEEEEEECCEEEEEEEECCHHHHHHHHHHHHHHHCC
Q ss_conf 25889875320223333431010207788845999999999899999968989999999999999748
Q gi|254780940|r 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 (227)
Q Consensus 157 pK~~Lqe~~q~~~~~~P~Y~~~~~~g~~~~~~f~v~v~v~g~~~g~g~g~SkK~Ae~~AA~~AL~klg 224 (227)
||+.||||||+.+...|.|+++.++||+|++.|+|.|.++|.. ++|.|+|||+||+.||+.||+.|.
T Consensus 2 pks~L~e~~qk~~~~~p~y~~~~~~G~~h~~~F~~~v~i~~~~-~~g~g~sKK~Ak~~AA~~al~~L~ 68 (69)
T 1di2_A 2 PVGSLQELAVQKGWRLPEYTVAQESGPPHKREFTITCRVETFV-ETGSGTSKQVAKRVAAEKLLTKFK 68 (69)
T ss_dssp HHHHHHHHHHHHTCCCCEEEEEEEESCGGGCEEEEEEEETTEE-EEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCEEEEEEECCEE-EEECCCCHHHHHHHHHHHHHHHHH
T ss_conf 7699999999659999869998856898888499999989999-984599599999999999999850
No 18
>>1x47_A DGCR8 protein; structural genomics, DSRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:)
Probab=99.58 E-value=8.3e-15 Score=110.70 Aligned_cols=74 Identities=23% Similarity=0.247 Sum_probs=67.6
Q ss_pred CCCCCCCCHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCEEEEEEEECCEEEEEEEECCHHHHHHHHHHHHHHHCC
Q ss_conf 1000134525889875320223333431010207788845999999999899999968989999999999999748
Q gi|254780940|r 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 (227)
Q Consensus 149 ~~~~~~~dpK~~Lqe~~q~~~~~~P~Y~~~~~~g~~~~~~f~v~v~v~g~~~g~g~g~SkK~Ae~~AA~~AL~klg 224 (227)
.......|||+.||||||+.+...|.|+++..+||+| .|.|.|.++|..++.|.|+|||+||+.||+.||.+|.
T Consensus 10 ~~~~~~~n~ks~L~e~~qk~~~~~p~y~~~~~~g~~~--~F~~~v~v~g~~~~~g~g~sKK~Ak~~AA~~aL~~L~ 83 (98)
T 1x47_A 10 VINPNGKSEVCILHEYMQRVLKVRPVYNFFECENPSE--PFGASVTIDGVTYGSGTASSKKLAKNKAARATLEILI 83 (98)
T ss_dssp CCCTTCCCHHHHHHHHHHHHTCSCCEEEEEECSSSSC--CEEEEEEETTEEEEEEEESSHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHCCCCCCHHEEECCCCCC--CEEEEEEECCEEEECCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 1187898999999999999578998132144168888--8899999999997257867599999999999999997
No 19
>>1x48_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} (A:)
Probab=99.57 E-value=9.8e-15 Score=110.25 Aligned_cols=70 Identities=19% Similarity=0.154 Sum_probs=64.1
Q ss_pred CCCCHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCEEEEEEEECCEEEEEEEECCHHHHHHHHHHHHHHHCC
Q ss_conf 134525889875320223333431010207788845999999999899999968989999999999999748
Q gi|254780940|r 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 (227)
Q Consensus 153 ~~~dpK~~Lqe~~q~~~~~~P~Y~~~~~~g~~~~~~f~v~v~v~g~~~g~g~g~SkK~Ae~~AA~~AL~klg 224 (227)
..+|||+.||||||+.+.. |+|+++ ++||+|+++|+|.|.|+|..+++|.|+|||+|++.||+.||++|.
T Consensus 4 ~~~~~k~~L~e~~qk~~~~-~~y~~~-~~gp~h~~~F~~~v~i~~~~~~~g~g~sKK~Ak~~AA~~aL~~L~ 73 (88)
T 1x48_A 4 GSSGYIGLVNSFAQKKKLS-VNYEQC-EPNSELPQRFICKCKIGQTMYGTGSGVTKQEAKQLAAKEAYQKLL 73 (88)
T ss_dssp SSSCHHHHHHHHHHHTTCC-EEEEEC-CCSSSSSCCEEEEEEESSCEEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCC-CCCCCC-CCCCCCCCCEEEEEEECCEEECCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 5566999999999986899-874024-758899976899999999995574641689999999999999998
No 20
>>1whn_A Hypothetical protein riken cDNA 2310016K04; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} (A:)
Probab=99.57 E-value=7.6e-15 Score=110.94 Aligned_cols=87 Identities=28% Similarity=0.306 Sum_probs=74.6
Q ss_pred CCCCCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCEEEEEEEECCEEEEEEE-ECC
Q ss_conf 1554220012210256431110001345258898753202233334310102077888459999999998999999-689
Q gi|254780940|r 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-DCS 207 (227)
Q Consensus 129 d~G~~~~~~~i~~~~~~~~~~~~~~~~dpK~~Lqe~~q~~~~~~P~Y~~~~~~g~~~~~~f~v~v~v~g~~~g~g~-g~S 207 (227)
|.|++.++.|+.+++. ..+|||+.||||||+.+...|.|+++ ||+|.+.|.|.|.|+|..++.+. |+|
T Consensus 8 d~~~~~~~~~~~~~~~--------~~~n~k~~L~e~~qk~~~~~P~y~~~---g~~~~~~F~~~v~v~g~~~~~~~~~~s 76 (128)
T 1whn_A 8 SGIIKMAIRFDRRAYP--------PQITPKMCLLEWCRREKLPQPVYETV---QRTIDRMFCSVVTVAEQKYQSTLWDKS 76 (128)
T ss_dssp SSSEEECCCCCGGGSC--------TTCCHHHHHHHHHHHTTCCCCCCCEE---ECSSSCCEEEEEEETTEEEEESSCBSS
T ss_pred CEEEEEEHHHHHCCCC--------CCCCHHHHHHHHHHHHCCCCCCEEEE---CCCCCCCCEEEEEECCEEEEECCCCCC
T ss_conf 4146543534301378--------88987899999998608998722222---036677647999986826650677564
Q ss_pred HHHHHHHHHHHHHHHCCCC
Q ss_conf 8999999999999974889
Q gi|254780940|r 208 KRAAEQVAAAEVLKREGIW 226 (227)
Q Consensus 208 kK~Ae~~AA~~AL~klgi~ 226 (227)
||+||+.||+.||+.|+..
T Consensus 77 KK~Ae~~AA~~aL~~L~~~ 95 (128)
T 1whn_A 77 KKLAEQTAAIVCLRSQGLP 95 (128)
T ss_dssp HHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHCCC
T ss_conf 8999999999999982897
No 21
>>1x49_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} (A:)
Probab=99.55 E-value=5.6e-15 Score=111.72 Aligned_cols=75 Identities=24% Similarity=0.178 Sum_probs=68.0
Q ss_pred CCCCCCCHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCEEEEEEEECCEEEEEEEECCHHHHHHHHHHHHHHHCCC
Q ss_conf 0001345258898753202233334310102077888459999999998999999689899999999999997488
Q gi|254780940|r 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 (227)
Q Consensus 150 ~~~~~~dpK~~Lqe~~q~~~~~~P~Y~~~~~~g~~~~~~f~v~v~v~g~~~g~g~g~SkK~Ae~~AA~~AL~klgi 225 (227)
......|||+.||||||+.+..+ .|+.+.++||+|.+.|+|.|+++|..+++|.|+|||+|++.||+.||..|.-
T Consensus 9 ~~~~~~n~ks~L~e~~q~~~~~~-~~~~~~~~g~~h~~~F~~~v~i~~~~~~~g~g~sKK~A~~~AA~~al~~L~~ 83 (97)
T 1x49_A 9 ASDTPGFYMDKLNKYRQMHGVAI-TYKELSTSGPPHDRRFTFQVLIDEKEFPEAKGRSKQEARNAAAKLAVDILDN 83 (97)
T ss_dssp SCCCTTHHHHHHHHHHHHHTCCE-EEEEEEEESCSSSCEEEEEEEESSCCCCCEEESSHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCHHHHHHHHHHHCCCCC-EEEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 78884369999999998749997-1799860189847435223102753102456562999999999999999987
No 22
>>2dmy_A Spermatid perinuclear RNA-binding protein; DSRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:)
Probab=99.55 E-value=2.7e-14 Score=107.51 Aligned_cols=73 Identities=29% Similarity=0.381 Sum_probs=66.0
Q ss_pred CCCCCCCHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCEEEEEEEECCEEEEEEEECCHHHHHHHHHHHHHHHCCC
Q ss_conf 0001345258898753202233334310102077888459999999998999999689899999999999997488
Q gi|254780940|r 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 (227)
Q Consensus 150 ~~~~~~dpK~~Lqe~~q~~~~~~P~Y~~~~~~g~~~~~~f~v~v~v~g~~~g~g~g~SkK~Ae~~AA~~AL~klgi 225 (227)
......|||+.||||||++.. |.|+++.++||+|++.|+|.|.+++.. +.|.|+|||+|++.||+.||+.|.-
T Consensus 11 ~~~~~~n~ks~L~e~~q~~~~--p~y~~~~~~g~~h~~~F~~~v~v~~~~-~~g~g~sKK~Ak~~AA~~al~~L~~ 83 (97)
T 2dmy_A 11 LDSKAIDLMNALMRLNQIRPG--LQYKLLSQSGPVHAPVFTMSVDVDGTT-YEASGPSKKTAKLHVAVKVLQAMGY 83 (97)
T ss_dssp CCCCSSSCTHHHHHHHHHSCS--CCCEEEEEESCSSSCEEEEEEEETTEE-EEEEESSHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCCCHHHHHHHCCCC--CEEEEEEEECCCCCCEEEEEEEECCEE-EEECCCCHHHHHHHHHHHHHHHHCC
T ss_conf 377666632999999854789--869997704799886299999999999-8616897999999999999999489
No 23
>>2dix_A Interferon-inducible double stranded RNA- dependent protein kinase activator A; structure genomics, DSRM domain, hypothetical protein PRKRA; NMR {Homo sapiens} (A:)
Probab=99.53 E-value=2.2e-14 Score=108.09 Aligned_cols=72 Identities=22% Similarity=0.295 Sum_probs=65.5
Q ss_pred CCCCCCHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCEEEEEEEECCEEEEEEEECCHHHHHHHHHHHHHHHCC
Q ss_conf 00134525889875320223333431010207788845999999999899999968989999999999999748
Q gi|254780940|r 151 GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 (227)
Q Consensus 151 ~~~~~dpK~~Lqe~~q~~~~~~P~Y~~~~~~g~~~~~~f~v~v~v~g~~~g~g~g~SkK~Ae~~AA~~AL~klg 224 (227)
....+|||+.||||||+.... |.|+++.++||+|++.|+|.|.+++.. ++|.|+|||+|++.||+.||++|.
T Consensus 4 ~~~~kn~~s~L~E~~qk~~~~-~~y~~~~~~G~~h~~~F~~~v~i~~~~-~~g~g~sKK~Ak~~AA~~al~~L~ 75 (84)
T 2dix_A 4 GSSGKTPIQVLHEYGMKTKNI-PVYECERSDVQIHVPTFTFRVTVGDIT-CTGEGTSKKLAKHRAAEAAINILK 75 (84)
T ss_dssp CCCCCCHHHHHHHHHHHTTCC-CEEEEEEEECSSSSCEEEEEEEETTEE-EEECSSCTTHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHCCCC-CCEEEEEEECCCCCCEEEEEEEEEEEC-CCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 779989889999999976999-985988600798873699999996300-232224599999999999999998
No 24
>>1qu6_A Protein kinase PKR; dsRNA-binding domain, solution structure, transferase; NMR {Homo sapiens} (A:1-92)
Probab=99.51 E-value=1e-14 Score=110.10 Aligned_cols=74 Identities=28% Similarity=0.263 Sum_probs=67.0
Q ss_pred CCCCCCCHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCEEEEEEEECCEEEEEEEECCHHHHHHHHHHHHHHHCC
Q ss_conf 000134525889875320223333431010207788845999999999899999968989999999999999748
Q gi|254780940|r 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 (227)
Q Consensus 150 ~~~~~~dpK~~Lqe~~q~~~~~~P~Y~~~~~~g~~~~~~f~v~v~v~g~~~g~g~g~SkK~Ae~~AA~~AL~klg 224 (227)
......|||+.|+||||+.+..+ .|+.+.++||+|+++|+|.|+++|..+++|.|+|||+|++.||+.||++|.
T Consensus 8 ~~~~~~npks~L~e~~q~~~~~~-~~~~~~~~g~~~~~~F~~~v~i~~~~~~~g~g~sKK~Ak~~AA~~aL~~L~ 81 (92)
T 1qu6_A 8 GDLSAGFFMEELNTYRQKQGVVL-KYQELPNSGPPHDRRFTFQVIIDGREFPEGEGRSKKEAKNAAAKLAVEILN 81 (92)
T ss_dssp CCSSSCSHHHHHHHHHHHHTCCC-EEEEEESCBTTTBCCEEEEEESSSSCCCEEECCSSHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHCCCCC-EEEEEEEECCCCCCCEEEEEEECCEEEEEECCCHHHHHHHHHHHHHHHHHH
T ss_conf 89997788999999998559897-299986568988881999999878477786372678999999999998764
No 25
>>1whq_A RNA helicase A; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Mus musculus} (A:)
Probab=99.49 E-value=4.8e-14 Score=105.98 Aligned_cols=71 Identities=20% Similarity=0.314 Sum_probs=63.1
Q ss_pred CCCCCHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCEEEEEEEECCEE-EEEEEECCHHHHHHHHHHHHHHHCC
Q ss_conf 013452588987532022333343101020778884599999999989-9999968989999999999999748
Q gi|254780940|r 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLKREG 224 (227)
Q Consensus 152 ~~~~dpK~~Lqe~~q~~~~~~P~Y~~~~~~g~~~~~~f~v~v~v~g~~-~g~g~g~SkK~Ae~~AA~~AL~klg 224 (227)
...+|||+.||||||+.+.. |+|+++ ++||+|++.|+|.|.|+|.. .++|.|+|||+|++.||+.||+.|.
T Consensus 3 ~~~~n~~~~L~e~~qk~~~~-p~Y~~~-~~G~~~~~~F~~~v~v~g~~~~~~g~G~sKK~Ak~~AA~~al~~L~ 74 (99)
T 1whq_A 3 SGSSGIKNFLYAWCGKRKMT-PAYEIR-AVGNKNRQKFMCEVRVEGFNYAGMGNSTNKKDAQSNAARDFVNYLV 74 (99)
T ss_dssp CCCCSSHHHHHHHHHHTTCC-CEEEEE-EEECSSSEEEEEEEECTTCSCCEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHCCCC-CEEEEE-EECCCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 77766889999999858999-869986-5506887638999995154332136883188999999999999999
No 26
>>1ekz_A DSRBDIII, maternal effect protein (staufen); structure, protein/RNA, protein DSRBD, RNA hairpin; NMR {Drosophila melanogaster} (A:)
Probab=99.48 E-value=1.4e-14 Score=109.29 Aligned_cols=73 Identities=16% Similarity=0.235 Sum_probs=66.0
Q ss_pred CCCCCCHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCEEEEEEEECCEEEEEEEECCHHHHHHHHHHHHHHHCCC
Q ss_conf 001345258898753202233334310102077888459999999998999999689899999999999997488
Q gi|254780940|r 151 GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 (227)
Q Consensus 151 ~~~~~dpK~~Lqe~~q~~~~~~P~Y~~~~~~g~~~~~~f~v~v~v~g~~~g~g~g~SkK~Ae~~AA~~AL~klgi 225 (227)
.....|||+.||||||+.+.. |.|.++.++||+|++.|+|.|.++|.. ++|+|+|||+|++.||+.||++|.=
T Consensus 3 ~~~~~n~ks~L~E~~qk~~~~-~~y~~~~~~G~~h~~~F~~~v~i~~~~-~~g~g~sKK~Ak~~AA~~al~~L~~ 75 (76)
T 1ekz_A 3 EGDKKSPISQVHEIGIKRNMT-VHFKVLREEGPAHMKNFITACIVGSIV-TEGEGNGKKVSKKRAAEKMLVELQK 75 (76)
T ss_dssp CCCCSCHHHHHHHHHHHTTCC-CEEEESSSCCSSSCSCSSEEEEETTEE-EEECCCSTTSSSHHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHCCCC-CEEEEEEEECCCCCCEEEEEEEECCEE-EECCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 777899899999999966999-759999713798776799999989899-7707885999999999999999972
No 27
>>1qu6_A Protein kinase PKR; dsRNA-binding domain, solution structure, transferase; NMR {Homo sapiens} (A:93-179)
Probab=99.47 E-value=6.4e-14 Score=105.25 Aligned_cols=72 Identities=18% Similarity=0.097 Sum_probs=63.8
Q ss_pred CCCCCCHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCEEEEEEEECCEEEEEEEECCHHHHHHHHHHHHHHHCC
Q ss_conf 00134525889875320223333431010207788845999999999899999968989999999999999748
Q gi|254780940|r 151 GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 (227)
Q Consensus 151 ~~~~~dpK~~Lqe~~q~~~~~~P~Y~~~~~~g~~~~~~f~v~v~v~g~~~g~g~g~SkK~Ae~~AA~~AL~klg 224 (227)
.....|||+.||||||+.+..+ .|.+. ++||+|.+.|+|.|.++|..+++|.|+|||+||+.||+.||.+|.
T Consensus 8 ~~~~~n~ks~L~e~~q~~~~~~-~~~~~-~~g~~~~~~f~~~v~i~g~~~~~g~g~sKK~Ak~~AA~~aL~~L~ 79 (87)
T 1qu6_A 8 GLSMGNYIGLINRIAQKKRLTV-NYEQC-ASGVHGPEGFHYKCKMGQKEYSIGTGSTKQEAKQLAAKLAYLQIL 79 (87)
T ss_dssp CCCCCCCHHHHHHHHHHSCCEE-EEEEE-EECSSSSSEEEEEEEEETTBCCEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHCCCCC-CEEEE-ECCCCCCCEEEEEEEECCEEEEEEEECCHHHHHHHHHHHHHHHHH
T ss_conf 3456675079999983049999-86888-338998742789999999999887769999999999999999985
No 28
>>2b7v_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} (A:)
Probab=99.45 E-value=1.8e-13 Score=102.53 Aligned_cols=66 Identities=23% Similarity=0.235 Sum_probs=60.6
Q ss_pred CCCCHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCEEEEEEEECCEEEEEEEECCHHHHHHHHHHHHHHHCC
Q ss_conf 134525889875320223333431010207788845999999999899999968989999999999999748
Q gi|254780940|r 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 (227)
Q Consensus 153 ~~~dpK~~Lqe~~q~~~~~~P~Y~~~~~~g~~~~~~f~v~v~v~g~~~g~g~g~SkK~Ae~~AA~~AL~klg 224 (227)
...|||+.||||||+ |.|.++.++||+|++.|.+.|.++|.. ++|.|+|||+|+++||+.||++|.
T Consensus 2 ~~~n~~s~L~E~~q~-----~~y~~~~~~g~~h~~~F~~~v~v~~~~-~~g~g~sKK~Ak~~AA~~al~~L~ 67 (71)
T 2b7v_A 2 SGKNPVMILNELRPG-----LKYDFLSESGESHAKSFVMSVVVDGQF-FEGSGRNKKLAKARAAQSALATVF 67 (71)
T ss_dssp CSSCHHHHHHHHCCS-----CEEEEEECCCCTTTCCEEEEEECSSCE-EEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCC-----CEEEEEEEECCCCCCEEEEEEEECCEE-EEECCCCHHHHHHHHHHHHHHHHH
T ss_conf 886989999997669-----879995738899897399999999999-982689799999999999999987
No 29
>>2b7t_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} (A:)
Probab=99.43 E-value=2.1e-13 Score=102.03 Aligned_cols=69 Identities=26% Similarity=0.378 Sum_probs=62.7
Q ss_pred CCCCCHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCEEEEEEEECCEEEEEEEECCHHHHHHHHHHHHHHHCCCC
Q ss_conf 013452588987532022333343101020778884599999999989999996898999999999999974889
Q gi|254780940|r 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 (227)
Q Consensus 152 ~~~~dpK~~Lqe~~q~~~~~~P~Y~~~~~~g~~~~~~f~v~v~v~g~~~g~g~g~SkK~Ae~~AA~~AL~klgi~ 226 (227)
...+||++.|||||| .|.|.++.++||+|++.|+|.|.|+|.. ++|.|+|||+||+.||+.||++|+-|
T Consensus 4 ~~~k~~~~~L~e~~q-----~p~y~~~~~~g~~h~~~F~~~v~v~~~~-~~g~G~SKK~Ak~~AA~~al~~L~~l 72 (73)
T 2b7t_A 4 VLPKNALMQLNEIKP-----GLQYMLLSQTGPVHAPLFVMSVEVNGQV-FEGSGPTKKKAKLHAAEKALRSFVQF 72 (73)
T ss_dssp SSSHHHHHHHHHHCS-----CCEEEEEEEECSSSSCEEEEEEESSSSE-EEEEESSHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHCCC-----CCEEEEEEEECCCCCCEEEEEEEECCEE-EECCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 798399999985189-----9879998703899887799999999998-78799868999999999999986009
No 30
>>2khx_A Ribonuclease 3; drosha, RNA binding domain, hydrolase, gene regulation, nuclear protein; NMR {Homo sapiens} (A:29-85)
Probab=99.10 E-value=1.1e-10 Score=85.41 Aligned_cols=50 Identities=28% Similarity=0.266 Sum_probs=46.6
Q ss_pred ECCCCCCCCCEEEEEEEECCEEEEEEEECCHHHHHHHHHHHHHHHCCCCC
Q ss_conf 10207788845999999999899999968989999999999999748899
Q gi|254780940|r 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 (227)
Q Consensus 178 ~~~~g~~~~~~f~v~v~v~g~~~g~g~g~SkK~Ae~~AA~~AL~klgi~t 227 (227)
+.++||+|+++|+|.|+++|..++.|.|+|||+||+.||+.||.+|+.+.
T Consensus 1 i~~~Gp~H~~~F~~~v~i~~~~~~~g~G~SKK~Aeq~AA~~al~~L~~~~ 50 (57)
T 2khx_A 1 LQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEKYNFPQ 50 (57)
T ss_dssp CCCCCSSSCCCEEEEEEETTEECCCEEESSHHHHHHHHHHHHHTTCCSSC
T ss_pred EEEECCCCCCEEEEEEEECCEEEECCCCCCHHHHHHHHHHHHHHHCCCCH
T ss_conf 87448988870999999999987368889899999999999999708711
No 31
>>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} (A:1-98)
Probab=97.55 E-value=0.00012 Score=48.07 Aligned_cols=69 Identities=23% Similarity=0.348 Sum_probs=51.3
Q ss_pred CCCHHHHHHHHHHCCCCCCCCCCEECCCCC-----------CCCC-EEEEEEEECCEEEEEEEECCHHHHHHHHHHHHHH
Q ss_conf 345258898753202233334310102077-----------8884-5999999999899999968989999999999999
Q gi|254780940|r 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGP-----------DHDP-RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 (227)
Q Consensus 154 ~~dpK~~Lqe~~q~~~~~~P~Y~~~~~~g~-----------~~~~-~f~v~v~v~g~~~g~g~g~SkK~Ae~~AA~~AL~ 221 (227)
..-||... .++++...-|++.+.... ..-| .|.|.+.+.+..+.+++-..||.|||.||+.||+
T Consensus 16 t~tPKaii----~QkfG~kA~Y~vEEV~es~q~gcpgLaipQkgp~lyrC~L~LPe~tVvS~~f~rKKDAEQ~AA~~AL~ 91 (98)
T 3htx_A 16 TPTPKAII----HQKFGAKASYTVEEVHDSSQSGCPGLAIPQKGPCLYRCHLQLPEFSVVSNVFKKKKDSEQSAAELALD 91 (98)
T ss_dssp CCCCHHHH----HHTTGGGSEEEEEEECCSCSCCCTTCCSCCCCCCEEEEEEECSSCEEECCCBSCHHHHHHHHHHHHHT
T ss_pred CCCHHHHH----HHHHCCCCEEEHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCEEEECEEHHCCCHHHHHHHHHHH
T ss_conf 89848999----88736410465687655540799864357668636898842898167502120023177889999999
Q ss_pred HCCCC
Q ss_conf 74889
Q gi|254780940|r 222 REGIW 226 (227)
Q Consensus 222 klgi~ 226 (227)
||||-
T Consensus 92 KlGI~ 96 (98)
T 3htx_A 92 KLGIR 96 (98)
T ss_dssp TTTST
T ss_pred HCCCC
T ss_conf 80899
No 32
>>2yt4_A Protein DGCR8; DSRBD, RNA binding domain, RNA binding protein; 2.60A {Homo sapiens} (A:105-232)
Probab=96.69 E-value=0.012 Score=35.94 Aligned_cols=68 Identities=18% Similarity=0.243 Sum_probs=47.4
Q ss_pred CCHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCEEEEEEEECCEEEEEEEECCHHHHHHHHHHHHHHHCC
Q ss_conf 4525889875320223333431010207788845999999999899999968989999999999999748
Q gi|254780940|r 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 (227)
Q Consensus 155 ~dpK~~Lqe~~q~~~~~~P~Y~~~~~~g~~~~~~f~v~v~v~g~~~g~g~g~SkK~Ae~~AA~~AL~klg 224 (227)
--|-..|++.++.+++.. .-.+..+..+..+....+...+++-. +++...+||+|+|.||+..|++|-
T Consensus 26 p~Py~~L~~cl~Rn~G~~-d~~ik~~~~~~~~~~~~~tmtvg~h~-~t~~cknKk~gkQlAaQaiLk~LH 93 (128)
T 2yt4_A 26 LSPYQILHECLKRNHGMG-DTSIKFEVVPGKNQKSEYVMACGKHT-VRGWCKNKRVGKQLASQKILQLLH 93 (128)
T ss_dssp CCHHHHHHHHHHTSSSCC-CEEEECC------CCEEEEEEETTEE-EEEEESSHHHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHCCCCCC-CEEEEEECCCCCCCEEEEEEEECCEE-EEEEECCHHHHHHHHHHHHHHHHH
T ss_conf 747899999985156888-65899813888897479999989999-998508489999999999999963
No 33
>>3c4b_A Endoribonuclease dicer; RNAse, dsRNA binding protein, ATP-binding, endonuclease, helicase, hydrolase, nucleotide-binding, phosphoprotein; HET: MSE; 1.68A {Mus musculus} PDB: 3c4t_A 2eb1_A (A:200-265)
Probab=95.70 E-value=0.04 Score=32.63 Aligned_cols=61 Identities=26% Similarity=0.251 Sum_probs=43.7
Q ss_pred CHHHHHHHHHHCC-CCCCCCCCEECCCCCCCCCEEEEEEEECCEEEEEEEECCHHHHHHHHHHHHHHHCC
Q ss_conf 5258898753202-23333431010207788845999999999899999968989999999999999748
Q gi|254780940|r 156 DAKTELQEWAHAK-FGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 (227)
Q Consensus 156 dpK~~Lqe~~q~~-~~~~P~Y~~~~~~g~~~~~~f~v~v~v~g~~~g~g~g~SkK~Ae~~AA~~AL~klg 224 (227)
.|..+|.|+-... .+..|+ + .-++...|.|.|-|+--..|.|.|.+.|+.-||+.||+.|+
T Consensus 2 SPiReLlEmePetakF~~~e-r-------~~dGkvrvtv~V~gkgrF~G~GRnyriAK~tAAk~ALr~Lk 63 (66)
T 3c4b_A 2 SPVRELLEXEPETAKFSPAE-R-------TYDGKVRVTVEVVGKGKFKGVGRSYRIAKSAAARRALRSLK 63 (66)
T ss_dssp CHHHHHHHHCTTTEEECCCE-E-------CTTSCEEEEEEETTTEEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCEEECCCC-C-------CCCCEEEEEEEECCEEEEEEEECCHHHHHHHHHHHHHHHHH
T ss_conf 44666631278750232456-8-------88983999999998899999838999999999999999987
No 34
>>2kou_A Dicer-like protein 4; ATP-binding, endonuclease, helicase, hydrolase, nuclease, nucleotide-binding, nucleus, RNA- binding; NMR {Arabidopsis thaliana} (A:)
Probab=94.40 E-value=0.18 Score=28.58 Aligned_cols=69 Identities=12% Similarity=0.126 Sum_probs=46.4
Q ss_pred CCHHHHHHHHHHCC-----CCCCCCCCEECCCCCCCCCEEEEEEEECC-----EEEEEEEECCHHHHHHHHHHHHH---H
Q ss_conf 45258898753202-----23333431010207788845999999999-----89999996898999999999999---9
Q gi|254780940|r 155 RDAKTELQEWAHAK-----FGVTPEYKVTFRSGPDHDPRFTVVVEISG-----LAPAQGMDCSKRAAEQVAAAEVL---K 221 (227)
Q Consensus 155 ~dpK~~Lqe~~q~~-----~~~~P~Y~~~~~~g~~~~~~f~v~v~v~g-----~~~g~g~g~SkK~Ae~~AA~~AL---~ 221 (227)
.+..+.|+.||+.- ....|.|.+...+. .+.|.|.|.+.- ...|. .-.||+.|++.||-+|. .
T Consensus 4 ~~Ai~lL~~yCs~Lp~d~f~~~~P~~~~~~~~~---~~~~~c~v~LP~~spi~~~~g~-~~~sk~~AK~~AAf~Ac~~L~ 79 (102)
T 2kou_A 4 GSSISMMYKYCSRLPHDEFFQPKPEFQFKPVDE---FGGTICRITLPANAPISEIESS-LLPSTEAAKKDACLKAVHELH 79 (102)
T ss_dssp SHHHHHHHHHHTTSSSCTTCCSSCEEEEEECCG---GGCEEEEEECCTTCSSCCEEEE-EESSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECC---CCEEEEEEECCCCCCCCEEECC-CCCCHHHHHHHHHHHHHHHHH
T ss_conf 129999999982389875566772189998368---8818999987899984717745-544689999999999999999
Q ss_pred HCCCCC
Q ss_conf 748899
Q gi|254780940|r 222 REGIWT 227 (227)
Q Consensus 222 klgi~t 227 (227)
++|.++
T Consensus 80 ~~G~ld 85 (102)
T 2kou_A 80 NLGVLN 85 (102)
T ss_dssp HHCSCT
T ss_pred HCCCCC
T ss_conf 869877
No 35
>>2db2_A KIAA0890 protein; DSRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:)
Probab=93.63 E-value=0.12 Score=29.62 Aligned_cols=68 Identities=21% Similarity=0.225 Sum_probs=41.6
Q ss_pred CCCHHHHHHHHHHCCCCC-----CCCCCEECCCCCCCCCEEEEEEEECCEEEEEEEECCHHHHHHHHHHHHHHHCC
Q ss_conf 345258898753202233-----33431010207788845999999999899999968989999999999999748
Q gi|254780940|r 154 RRDAKTELQEWAHAKFGV-----TPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 (227)
Q Consensus 154 ~~dpK~~Lqe~~q~~~~~-----~P~Y~~~~~~g~~~~~~f~v~v~v~g~~~g~g~g~SkK~Ae~~AA~~AL~klg 224 (227)
.-+||+.|...+|..... ...|. ..+|+. .+.-+..+....-.-.+|.|+.|.+||.+||..|+.+++
T Consensus 16 Fp~PKnLL~nVi~rA~~~S~~kd~L~y~--~t~g~~-~Kk~Tl~l~WP~~m~~e~~G~kK~eAE~kAAa~AC~~lK 88 (119)
T 2db2_A 16 FPQPKNLLNSVIGRALGISHAKDKLVYV--HTNGPK-KKKVTLHIKWPKSVEVEGYGSKKIDAERQAAAAACQLFK 88 (119)
T ss_dssp CSCHHHHHHHHHHHHTTHHHHHHHEEEE--ECCSSS-SEEEEEEECSSSCEEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCCHHHHEEEE--ECCCCC-EEEEEEEEECCCCEEEEEECCHHHHHHHHHHHHHHHHHH
T ss_conf 7983889999999996455454526778--515884-477899981796289885152346777624589999998
No 36
>>1ztd_A Hypothetical protein PFU-631545-001; structural genomics, southeast collaboratory for structural genomics, secsg; 2.00A {Pyrococcus furiosus} (A:)
Probab=83.77 E-value=3 Score=21.12 Aligned_cols=84 Identities=24% Similarity=0.246 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHHHHH--HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCHHHH
Q ss_conf 788745868864547877--641046887899888888874433454543138772001036631237531333332669
Q gi|254780940|r 42 RLEFLGDRILGLLISTLL--FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 (227)
Q Consensus 42 rLEflGDavL~~~v~~~l--~~~~p~~~eG~lt~lr~~lV~n~~La~~a~~lgl~~~l~~~~~~~~~~~~~~~~ilad~f 119 (227)
-|.-+||+.++|++|--| |.-+|... -|-|.+|+---..-||...+. +....-.+|.-
T Consensus 14 ~LakfGDSLiNFl~SlALse~lG~Ptg~----------rVPnaSLaiAle~agLs~~l~----------r~dkh~kGd~a 73 (133)
T 1ztd_A 14 GLAKFGDSLINFLYSLALTEFLGKPTGD----------RVPNASLAIALELTGLSKNLR----------RVDKHAKGDYA 73 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSCCCC----------CCCHHHHHHHHHHHTGGGGCC----------GGGTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCC----------CCCCHHHHHHHHHHHHHHCCC----------CCCCCCCCHHH
T ss_conf 5888708999999999999992899878----------788739999999971764188----------75667861799
Q ss_pred HHHHHHHHHCCCCC--CCHHHHHCCCCC
Q ss_conf 99999996415542--200122102564
Q gi|254780940|r 120 ESLIAALYLDGGIE--VAGTFVDKYWKQ 145 (227)
Q Consensus 120 EA~iGAiy~d~G~~--~~~~~i~~~~~~ 145 (227)
||+++--|+.+-+. .+-.++..-+.+
T Consensus 74 EA~iAyAWLeG~is~eEavEil~~nl~~ 101 (133)
T 1ztd_A 74 EALIAKAWLMGLISEREAVEIIKKNLYP 101 (133)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHTTCCG
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHCCCH
T ss_conf 9999999980535199999999961747
No 37
>>3i1m_E 30S ribosomal protein S5; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_E* 1vs5_E 3i1o_E 3i1q_E 3i1s_E 3i1z_E 3i21_E 2qal_E* 1p6g_E 1p87_E 2aw7_E 2avy_E 2i2u_E 2i2p_E* 2qan_E* 2qb9_E* 2qbb_E* 2qbd_E 2qbf_E 2qbh_E* ... (E:)
Probab=47.97 E-value=18 Score=16.29 Aligned_cols=41 Identities=17% Similarity=0.008 Sum_probs=28.9
Q ss_pred CCCCCEEEEEEEECCE----EEEEEEECCHHHHHHHHHHHHHHHC
Q ss_conf 7888459999999998----9999996898999999999999974
Q gi|254780940|r 183 PDHDPRFTVVVEISGL----APAQGMDCSKRAAEQVAAAEVLKRE 223 (227)
Q Consensus 183 ~~~~~~f~v~v~v~g~----~~g~g~g~SkK~Ae~~AA~~AL~kl 223 (227)
..+...|.+-|.+++. -+|.|.|..-..|-++|...|.++|
T Consensus 27 ~Gr~~~f~alvvvGn~nG~vG~G~gka~ev~~Ai~kA~~~A~~nl 71 (167)
T 3i1m_E 27 GGRIFSFTALTVVGDGNGRVGFGYGKAREVPAAIQKAMEKARRNM 71 (167)
T ss_dssp TBCCEEEEEEEEEECSSSCEEEECCEESSHHHHHHHHHHHHHSSE
T ss_pred CCCCEEEEEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHH
T ss_conf 886216899999967998787511117658999999999998541
No 38
>>2vqe_E 30S ribosomal protein S5; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} (E:1-143)
Probab=41.36 E-value=23 Score=15.66 Aligned_cols=38 Identities=18% Similarity=0.038 Sum_probs=24.9
Q ss_pred CCEEEEEEEECC---E-EEEEEEECCHHHHHHHHHHHHHHHC
Q ss_conf 845999999999---8-9999996898999999999999974
Q gi|254780940|r 186 DPRFTVVVEISG---L-APAQGMDCSKRAAEQVAAAEVLKRE 223 (227)
Q Consensus 186 ~~~f~v~v~v~g---~-~~g~g~g~SkK~Ae~~AA~~AL~kl 223 (227)
...|.+-|.+++ . -+|.|.|+.-..|-++|..+|.++|
T Consensus 25 ~~~f~alvvvGn~~G~vG~G~gK~~e~~~Ai~kA~~~A~~nl 66 (143)
T 2vqe_E 25 RFRFGALVVVGDRQGRVGLGFGKAPEVPLAVQKAGYYARRNM 66 (143)
T ss_dssp EEEEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHHTTSE
T ss_pred EEEEEEEEEECCCCCCEEECCCCCCCCHHHHHHHHHHHHCCE
T ss_conf 267999999837985354621136664789999999750887
No 39
>>3bbn_E Ribosomal protein S5; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} (E:1-220)
Probab=31.62 E-value=33 Score=14.70 Aligned_cols=38 Identities=21% Similarity=0.185 Sum_probs=26.4
Q ss_pred CCEEEEEEEECC---E-EEEEEEECCHHHHHHHHHHHHHHHC
Q ss_conf 845999999999---8-9999996898999999999999974
Q gi|254780940|r 186 DPRFTVVVEISG---L-APAQGMDCSKRAAEQVAAAEVLKRE 223 (227)
Q Consensus 186 ~~~f~v~v~v~g---~-~~g~g~g~SkK~Ae~~AA~~AL~kl 223 (227)
...|.+-|.+++ . -+|.|.+..-..|-++|...|.++|
T Consensus 171 ~~~f~alvvvGn~nG~vG~G~gKa~e~~~Ai~kA~~~A~~nl 212 (220)
T 3bbn_E 171 HMRFRAIVVVGDKKGQVGVGVGKAKEVVSAVQKAAVDARRNI 212 (220)
T ss_dssp EECCEEEEEEECSSSEEEEEEEECSSHHHHHHHHHHTTTTSC
T ss_pred CCEEEEEEEEECCCCCEEEEEEECCCHHHHHHHHHHHHHHHH
T ss_conf 415899999966999785787744648999999999999876
No 40
>>2o3f_A Putative HTH-type transcriptional regulator YBBH; APC85504, putative transcriptional regulator YBBH; HET: MLY; 1.75A {Bacillus subtilis} (A:)
Probab=28.63 E-value=13 Score=17.15 Aligned_cols=42 Identities=17% Similarity=0.184 Sum_probs=29.6
Q ss_pred HHHHHHHHHC---CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEE
Q ss_conf 5478776410---4688789988888887443345454313877200
Q gi|254780940|r 54 LISTLLFNHF---DSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 (227)
Q Consensus 54 ~v~~~l~~~~---p~~~eG~lt~lr~~lV~n~~La~~a~~lgl~~~l 97 (227)
.|++|+..++ +.++-.++. +..-||..++.+.|+++|+..|-
T Consensus 25 ~ia~yil~n~~~~~~~si~eiA--~~~~vS~sTI~Rf~kkLGy~gf~ 69 (111)
T 2o3f_A 25 KLADYILAHPHXAIESTVNEIS--ALANSSDAAVIRLCXSLGLKGFQ 69 (111)
T ss_dssp HHHHHHHHCHHHHHTCCHHHHH--HHTTCCHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHCHHHHHHCCHHHHH--HHHCCCHHHHHHHHHHHCCCCHH
T ss_conf 9999999592476555799999--99798999999999996679899
No 41
>>1ais_A TBP, protein (tata-binding protein); hyperthermophIle; HET: DNA 5IU; 2.10A {Pyrococcus woesei} (A:)
Probab=28.58 E-value=37 Score=14.38 Aligned_cols=31 Identities=19% Similarity=0.223 Sum_probs=20.6
Q ss_pred CCEEEEEEEECCEEEEEEEECCHHHHHHHHHH
Q ss_conf 84599999999989999996898999999999
Q gi|254780940|r 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217 (227)
Q Consensus 186 ~~~f~v~v~v~g~~~g~g~g~SkK~Ae~~AA~ 217 (227)
+|.-++.|+..|+.+.+|. +|..+|++.+.+
T Consensus 143 ~p~~~~~iF~sGki~itGa-ks~~~~~~a~~~ 173 (182)
T 1ais_A 143 EPKSVILLFSSGKIVCSGA-KSEADAWEAVRK 173 (182)
T ss_dssp TTTEEEEECTTSEEEEEEE-SSHHHHHHHHHH
T ss_pred CCCEEEEEECCCEEEEECC-CCHHHHHHHHHH
T ss_conf 9987999977988999778-999999999999
No 42
>>3iwf_A Transcription regulator RPIR family; transcriptional, N-terminal, domain, PSI, MCSG, structural genomics; 1.40A {Staphylococcus epidermidis atcc 12228} (A:1-74)
Probab=26.40 E-value=19 Score=16.17 Aligned_cols=42 Identities=12% Similarity=0.190 Sum_probs=29.3
Q ss_pred HHHHHHHHH---CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEE
Q ss_conf 547877641---04688789988888887443345454313877200
Q gi|254780940|r 54 LISTLLFNH---FDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 (227)
Q Consensus 54 ~v~~~l~~~---~p~~~eG~lt~lr~~lV~n~~La~~a~~lgl~~~l 97 (227)
.|++|+.++ .+.++-.++. ...-||..++.+.|+++|+..|-
T Consensus 21 ~ia~yil~~~~~~~~~si~eiA--~~~~vS~stv~Rf~kklGf~gf~ 65 (74)
T 3iwf_A 21 KIAQFILNYPHKVVNXTSQEIA--NQLETSSTSIIRLSKKVTPGGFN 65 (74)
T ss_dssp HHHHHHHHCHHHHTTCCHHHHH--HHHTSCHHHHHHHHHHHSTTHHH
T ss_pred HHHHHHHHCHHHHHHCCHHHHH--HHHCCCHHHHHHHHHHHCCCCHH
T ss_conf 9999999199999776399999--99799998999999995899999
No 43
>>2z8u_A Tata-box-binding protein; transcription, DNA-binding protein, transcription factor, transcription regulation; 1.90A {Methanococcus jannaschii} (A:)
Probab=25.62 E-value=42 Score=14.05 Aligned_cols=29 Identities=28% Similarity=0.384 Sum_probs=18.3
Q ss_pred CCEEEEEEEECCEEEEEEEECCHHHHHHHH
Q ss_conf 845999999999899999968989999999
Q gi|254780940|r 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 (227)
Q Consensus 186 ~~~f~v~v~v~g~~~g~g~g~SkK~Ae~~A 215 (227)
+|.-++.|+..|+.+-+|. +|..++++..
T Consensus 147 ~p~~~~~IF~sGkivitGa-ks~~~~~~a~ 175 (188)
T 2z8u_A 147 DPKVVVLIFGSGKVVITGL-KSEEDAKRAL 175 (188)
T ss_dssp TTEEEEEECTTSEEEEESC-SCHHHHHHHH
T ss_pred CCCEEEEEECCCEEEEECC-CCHHHHHHHH
T ss_conf 9978999976887999888-9999999999
No 44
>>1rt8_A Fimbrin; filamentous actin binding domain (ABD), calponin homology, actin-crosslinking, structural protein; 2.00A {Schizosaccharomyces pombe} (A:211-271)
Probab=25.49 E-value=33 Score=14.71 Aligned_cols=23 Identities=26% Similarity=0.351 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCH
Q ss_conf 45868864547877641046887
Q gi|254780940|r 46 LGDRILGLLISTLLFNHFDSAKE 68 (227)
Q Consensus 46 lGDavL~~~v~~~l~~~~p~~~e 68 (227)
-|..=|++.....||.+||.+++
T Consensus 35 ~Gn~kLNLAFVAnLFn~~p~L~~ 57 (61)
T 1rt8_A 35 AGNPKLNLAFVAHLFNTHPGLEP 57 (61)
T ss_dssp TTCHHHHHHHHHHHHHHCCCCCC
T ss_pred CCCHHHHHHHHHHHHHCCCCCCC
T ss_conf 88733546889765420789874
No 45
>>1psw_A ADP-heptose LPS heptosyltransferase II; structural genomics, NYSGXRC, LPS biosynthetic pathway, PSI, protein structure initiative; 2.00A {Escherichia coli} (A:1-150)
Probab=24.19 E-value=45 Score=13.89 Aligned_cols=49 Identities=12% Similarity=0.162 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC-CCEEEE
Q ss_conf 887458688645478776410468878998888888744334545431387-720010
Q gi|254780940|r 43 LEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDL-ASFIRV 99 (227)
Q Consensus 43 LEflGDavL~~~v~~~l~~~~p~~~eG~lt~lr~~lV~n~~La~~a~~lgl-~~~l~~ 99 (227)
+-.+||.|+..-+...|-+.||+..-. ++++...+.+...... ++++..
T Consensus 8 ~~~iGD~i~~~p~l~alk~~~P~a~I~--------~l~~~~~~~l~~~~p~vd~i~~~ 57 (150)
T 1psw_A 8 PSWVGDXXXSQSLYRTLQARYPQAIID--------VXAPAWCRPLLSRXPEVNEAIPX 57 (150)
T ss_dssp CSSHHHHHHHHHHHHHHHHHSTTCEEE--------EEECGGGHHHHTTCTTEEEEEEC
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCEEE--------EEECHHHHHHHHHCCCCCEEEEE
T ss_conf 897089999999999999878999899--------99895189999509985689995
No 46
>>1mp9_A Tata-binding protein; transcription regulation, DNA-binding protein, transcription factor, DNA binding protein; 2.00A {Sulfolobus acidocaldarius} (A:)
Probab=21.72 E-value=50 Score=13.59 Aligned_cols=39 Identities=15% Similarity=0.166 Sum_probs=24.9
Q ss_pred CCEEEEEEEECCEEEEEEEECCHHHHHHHHHHH--HHHHCCC
Q ss_conf 845999999999899999968989999999999--9997488
Q gi|254780940|r 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE--VLKREGI 225 (227)
Q Consensus 186 ~~~f~v~v~v~g~~~g~g~g~SkK~Ae~~AA~~--AL~klgi 225 (227)
+|.-++-++..|+.+-+|. +|..++++....- .|.++|.
T Consensus 147 ~pk~~~lIF~sGkivitGa-ks~e~~~~a~~~i~~~L~~~~~ 187 (198)
T 1mp9_A 147 EPRVVLLIFSSGKMVITGA-KREDEVHKAVKKIFDKLVELDC 187 (198)
T ss_dssp TTTEEEEECTTSEEEEEEE-SSHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCEEEEEECCCEEEEECC-CCHHHHHHHHHHHHHHHHHHHC
T ss_conf 9978999967975999768-9999999999999999998635
No 47
>>1vq2_A DCMP deaminase, deoxycytidylate deaminase; hydrolase; HET: DDN; 2.20A {Enterobacteria phage T4} (A:1-45,A:102-193)
Probab=21.64 E-value=50 Score=13.58 Aligned_cols=39 Identities=21% Similarity=0.105 Sum_probs=23.0
Q ss_pred CCEEEEEEEECCEEEEEEEECCH---HHHHHHHHHHHHHHCC
Q ss_conf 84599999999989999996898---9999999999999748
Q gi|254780940|r 186 DPRFTVVVEISGLAPAQGMDCSK---RAAEQVAAAEVLKREG 224 (227)
Q Consensus 186 ~~~f~v~v~v~g~~~g~g~g~Sk---K~Ae~~AA~~AL~klg 224 (227)
...+-+.+.-+++++++|+..+- ..||..|.+.|-++-.
T Consensus 21 ~~~vg~~~~~~~~i~~~g~~~~p~~t~HAEi~Ai~~a~~~~~ 62 (137)
T 1vq2_A 21 SWKVGAVIEKNGRIISTGYNGSPAGEIHAELNAILFAAENGS 62 (137)
T ss_dssp SBCCEEEEEETTEEEEEEECBCCTTCBCHHHHHHHHHHHHTC
T ss_pred CCCEEEEEEECCEEEEEECCCCCCCCCCHHHHHHHHHHHHCC
T ss_conf 998579999799899973378876775689999999886168
Done!