HHsearch results for GI: 254780940 and protein with PDBid: 1whq_A

>1whq_A RNA helicase A; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Mus musculus} SCOP: d.50.1.1

Probab=99.54  E-value=5.6e-15  Score=110.82  Aligned_cols=68  Identities=22%  Similarity=0.381  Sum_probs=61.3

Q ss_pred             CCCHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCEEEEEEEECCEE-EEEEEECCHHHHHHHHHHHHHHHC
Q ss_conf             3452588987532022333343101020778884599999999989-999996898999999999999974
Q gi|254780940|r  154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLKRE  223 (227)
Q Consensus       154 ~~dpK~~Lqe~~q~~~~~~P~Y~~~~~~g~~~~~~f~v~v~v~g~~-~g~g~g~SkK~Ae~~AA~~AL~kl  223 (227)
                      -.++|+.||||||+++. .|.|++. ++||+|+++|.|.|.|+|.. +++|.|+|||+||+.||+.||+.|
T Consensus         5 ~~~~Ks~LqE~~qk~k~-~P~Y~~~-~~g~~h~~~F~~~v~v~g~~~~~~g~g~sKK~Aeq~AA~~al~~L   73 (99)
T 1whq_A            5 SSGIKNFLYAWCGKRKM-TPAYEIR-AVGNKNRQKFMCEVRVEGFNYAGMGNSTNKKDAQSNAARDFVNYL   73 (99)
T ss_dssp             CCSSHHHHHHHHHHTTC-CCEEEEE-EEECSSSEEEEEEEECTTCSCCEEEEESSHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHCCC-CCEEEEE-CCCCCCCCEEEEEEEECCEECCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf             87677999999984799-9889860-236898987999999878351255777649999999999999999