HHsearch results for GI: 254780940 and protein with PDBid: 2cpn_A

>2cpn_A TAR RNA-binding protein 2; double-stranded RNA binding domain, DSRBD, DSRM., structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.50.1.1

Probab=99.67  E-value=2e-16  Score=119.71  Aligned_cols=74  Identities=32%  Similarity=0.368  Sum_probs=68.7

Q ss_pred             CCCCCCCHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCEEEEEEEECCEEEEEEEECCHHHHHHHHHHHHHHHCC
Q ss_conf             000134525889875320223333431010207788845999999999899999968989999999999999748
Q gi|254780940|r  150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG  224 (227)
Q Consensus       150 ~~~~~~dpK~~Lqe~~q~~~~~~P~Y~~~~~~g~~~~~~f~v~v~v~g~~~g~g~g~SkK~Ae~~AA~~AL~klg  224 (227)
                      ......|||+.||||||+.+..+|+|+++.++||+|.+.|.|.|++++.. ++|.|+|||+||+.||+.||++|.
T Consensus        11 ~~~~~~npks~LqE~~q~~~~~~P~Y~~~~~~G~~h~~~F~~~v~v~~~~-~~g~g~sKK~Ae~~AA~~aL~~L~   84 (89)
T 2cpn_A           11 PQQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFI-EIGSGTSKKLAKRNAAAKMLLRVS   84 (89)
T ss_dssp             CCCCCCCHHHHHHHHHHHHTCCCCEEEEEEEECCSSSCEEEEEEEETTEE-EEEEESSHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCEEEEEEEEEEEE-EECCCCCHHHHHHHHHHHHHHHHH
T ss_conf             76567886899999999759999948744013898886089999993257-641677799999999999999971