HHsearch results for GI: 254780940 and protein with PDBid: 3n3w_A
>3n3w_A Ribonuclease III; nuclease domain, ribonuclase III, IDP90862, csgid, structura genomics; 2.21A {Campylobacter jejuni subsp}
Probab=100.00 E-value=0 Score=418.01 Aligned_cols=220 Identities=34% Similarity=0.506 Sum_probs=206.6
Q ss_pred CHHHHHHHHCCCCCCHHHHHHHCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 88999998369658989999842461212667665477887458688645478776410468878998888888744334
Q gi|254780940|r 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETC 84 (227)
Q Consensus 5 ~~~~l~~~lgy~f~~~~ll~~A~th~S~~~~~~~~~erLEflGDavL~~~v~~~l~~~~p~~~eG~lt~lr~~lV~n~~L 84 (227)
+++.||++|||+|+|++||.+||||+||... .|||||||||||||+++|++|||.+||+++||.||++|+.+|||++|
T Consensus 27 ~i~~le~~lgy~F~~~~LL~~AlTH~S~~~~--~~~erLEflGDavL~~~v~~~L~~~~p~~~eG~lt~lr~~lV~n~~L 104 (248)
T 3n3w_A 27 NIEKLEQSLTYEFKDKNLLIHALTHKSFKKS--YNNERLEFLGDAVLDLVVGEYLFHKFAKDAEGDLSKLRAALVNEKSF 104 (248)
T ss_dssp THHHHHHHHTCCCSSHHHHHHHTBCTTSBTT--BCSHHHHHHHHHHHHHHHHHHHHHHTTTCSCCCHHHHHHHHHSHHHH
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHCCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCHHHH
T ss_conf 1999999969842888899999657577988--88459999989999999999998418999888979999987388899
Q ss_pred HHHHHHCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCCCC--CCCCCCCHHHHHH
Q ss_conf 54543138772001036631237531333332669999999964155422001221025643111--0001345258898
Q gi|254780940|r 85 SQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQ 162 (227)
Q Consensus 85 a~~a~~lgl~~~l~~~~~~~~~~~~~~~~ilad~fEA~iGAiy~d~G~~~~~~~i~~~~~~~~~~--~~~~~~dpK~~Lq 162 (227)
+++|.++||+++++++..........+++++||+|||+|||||+|+|++.++.||.++|.+.... ......|||+.||
T Consensus 105 a~ia~~lgl~~~l~~~~~~~~~~~~~~~~ilad~fEAliGAiylD~G~~~~~~~v~~~~~~~l~~~~~~~~~~d~K~~L~ 184 (248)
T 3n3w_A 105 AKIANSLNLGDFILMSVAEENNGGKEKPSILSDALEAIIGAIHLEAGFEFAKTIALRLIEKNFPQIDAKILIKDYKTKLQ 184 (248)
T ss_dssp HHHHHHTTGGGTCBCCHHHHHTTGGGCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCC----------------
T ss_pred HHHHHHCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCH
T ss_conf 99998879833453064321257743266999999999876762478099999999988989999864103576103176
Q ss_pred HHHHCCCCCCCCCCEECCCCCCCCCEEEEEEEECCEEEEEEEECCHHHHHHHHHHHHHHHCCCC
Q ss_conf 7532022333343101020778884599999999989999996898999999999999974889
Q gi|254780940|r 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 (227)
Q Consensus 163 e~~q~~~~~~P~Y~~~~~~g~~~~~~f~v~v~v~g~~~g~g~g~SkK~Ae~~AA~~AL~klgi~ 226 (227)
||||++++..|+|+++.++||+|.+.|.|+|+++|..+|+|+|+|||+||+.||+.||++||.+
T Consensus 185 e~~q~~~~~~p~Y~~~~~~g~~~~~~f~v~v~i~g~~~g~g~g~sKK~Ae~~AA~~AL~~L~~l 248 (248)
T 3n3w_A 185 EITQGKIGQTPQYETVRAFGPDHLKQFEIALMLDGKELARAIAGSKKEAQQMAAKIALEKLGAL 248 (248)
T ss_dssp ----------------------------------------------------------------
T ss_pred HHHHHCCCCCCCEEEEEEECCCCCCEEEEEEEECCEEEEEEEECCHHHHHHHHHHHHHHHHCCC
T ss_conf 9997327899853467637789897499999999989999873899999999999999986849