Query gi|254780940|ref|YP_003065353.1| ribonuclease III [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 227
No_of_seqs 139 out of 3294
Neff 7.6
Searched_HMMs 23785
Date Tue May 31 22:30:40 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780940.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1o0w_A Ribonuclease III, RNAse 100.0 0 0 409.1 15.5 221 4-224 19-248 (252)
2 3n3w_A Ribonuclease III; nucle 100.0 0 0 418.0 7.5 220 5-226 27-248 (248)
3 2a11_A Ribonuclease III, RNAse 100.0 0 0 395.1 8.2 220 5-226 6-232 (242)
4 2nug_A Ribonuclease III, RNAse 100.0 0 0 382.4 18.0 211 5-224 3-218 (221)
5 3c4b_A Endoribonuclease dicer; 100.0 0 0 367.3 16.1 214 5-224 14-262 (265)
6 3o2r_A Ribonuclease III; struc 100.0 1.3E-40 5.6E-45 268.6 8.6 141 5-147 27-167 (170)
7 2gsl_A Hypothetical protein; a 99.9 7.6E-25 3.2E-29 171.5 5.5 120 27-148 1-131 (137)
8 1u61_A Hypothetical protein; s 99.9 1.4E-24 6E-29 169.8 5.6 113 32-145 4-128 (138)
9 2khx_A Ribonuclease 3; drosha, 99.7 2.6E-18 1.1E-22 131.3 6.6 71 155-225 1-76 (85)
10 1uhz_A Staufen (RNA binding pr 99.7 9.7E-17 4.1E-21 121.6 9.2 72 154-226 5-76 (89)
11 2cpn_A TAR RNA-binding protein 99.7 2E-16 8.4E-21 119.7 9.0 74 150-224 11-84 (89)
12 3adj_A F21M12.9 protein; HYL1, 99.7 8.4E-17 3.5E-21 122.0 6.8 70 155-224 4-73 (76)
13 1whn_A Hypothetical protein ri 99.7 2.1E-16 9E-21 119.5 8.1 85 139-226 10-95 (128)
14 3adl_A RISC-loading complex su 99.7 2.7E-16 1.1E-20 118.9 8.5 76 150-226 10-85 (88)
15 1di2_A XLRBPA, double stranded 99.6 3.7E-16 1.6E-20 118.1 8.0 67 157-224 2-68 (69)
16 2dix_A Interferon-inducible do 99.6 7.7E-16 3.2E-20 116.1 7.1 71 152-224 5-75 (84)
17 1x47_A DGCR8 protein; structur 99.6 2.2E-15 9.3E-20 113.3 8.9 71 151-223 12-82 (98)
18 1uil_A Double-stranded RNA-bin 99.6 9.6E-16 4E-20 115.5 6.5 74 151-226 22-103 (113)
19 2l2n_A Hyponastic leave 1; DSR 99.6 8.3E-16 3.5E-20 115.9 5.7 71 153-224 15-86 (103)
20 1x49_A Interferon-induced, dou 99.6 1.2E-15 4.8E-20 115.0 5.7 69 155-224 14-82 (97)
21 1t4o_A Ribonuclease III; RNT1P 99.6 1.4E-15 5.9E-20 114.5 6.1 76 149-226 2-78 (117)
22 2yt4_A Protein DGCR8; DSRBD, R 99.6 7E-15 2.9E-19 110.2 8.7 68 154-223 129-196 (232)
23 1t4n_A Ribonuclease III; DSRBD 99.6 1.2E-15 5E-20 115.0 4.7 74 151-226 2-76 (94)
24 3adg_A F21M12.9 protein; HYL1, 99.6 3.4E-15 1.4E-19 112.1 7.0 69 155-224 3-72 (73)
25 1x48_A Interferon-induced, dou 99.6 7.8E-15 3.3E-19 109.9 8.1 67 155-223 6-72 (88)
26 1whq_A RNA helicase A; double- 99.5 5.6E-15 2.3E-19 110.8 6.1 68 154-223 5-73 (99)
27 1qu6_A Protein kinase PKR; dsR 99.5 5E-15 2.1E-19 111.1 4.5 70 152-223 101-170 (179)
28 1ekz_A DSRBDIII, maternal effe 99.5 3.8E-15 1.6E-19 111.9 3.3 71 152-224 4-74 (76)
29 2qvw_A GLP_546_48378_50642; di 99.5 9.5E-14 4E-18 103.2 8.0 104 38-146 332-436 (756)
30 2b7v_A Double-stranded RNA-spe 99.4 1.4E-13 6E-18 102.1 7.2 65 153-223 2-66 (71)
31 2dmy_A Spermatid perinuclear R 99.4 1.5E-12 6.3E-17 95.9 9.8 68 153-226 17-84 (97)
32 2l33_A Interleukin enhancer-bi 99.4 1.7E-12 7.2E-17 95.5 8.5 68 151-224 13-80 (91)
33 1qu6_A Protein kinase PKR; dsR 99.3 1.5E-12 6.1E-17 95.9 6.0 71 153-224 11-81 (179)
34 2b7t_A Double-stranded RNA-spe 99.3 5.1E-12 2.1E-16 92.6 7.3 67 155-224 4-70 (73)
35 2qvw_A GLP_546_48378_50642; di 99.3 6E-12 2.5E-16 92.1 6.6 140 6-148 595-753 (756)
36 2l3j_A Double-stranded RNA-spe 99.2 4.5E-11 1.9E-15 86.8 9.0 68 150-223 156-223 (236)
37 2yt4_A Protein DGCR8; DSRBD, R 99.1 1.3E-10 5.4E-15 84.0 8.2 72 150-223 17-88 (232)
38 2l3j_A Double-stranded RNA-spe 99.1 2.6E-10 1.1E-14 82.1 7.5 65 154-224 6-70 (236)
39 3htx_A HEN1; HEN1, small RNA m 97.2 0.00038 1.6E-08 44.1 5.1 69 156-224 395-502 (950)
40 2db2_A KIAA0890 protein; DSRM 92.8 0.14 5.9E-06 28.4 4.8 68 154-224 16-88 (119)
41 2kou_A Dicer-like protein 4; A 90.9 0.59 2.5E-05 24.5 6.3 69 155-227 4-85 (102)
42 1ztd_A Hypothetical protein PF 82.4 2.4 1E-04 20.8 6.0 84 42-145 14-101 (133)
43 3bbn_E Ribosomal protein S5; s 37.1 18 0.00074 15.5 2.4 38 186-223 171-212 (308)
44 2dae_A KIAA0733 protein; mitog 26.3 28 0.0012 14.2 2.0 36 51-88 9-44 (75)
45 3iwf_A Transcription regulator 26.2 14 0.00057 16.1 0.4 41 55-97 22-65 (107)
46 2hze_A Glutaredoxin-1; thiored 24.4 17 0.00073 15.5 0.7 34 192-226 78-111 (114)
47 2zkq_e 40S ribosomal protein S 21.3 36 0.0015 13.5 6.5 37 187-223 30-70 (179)
48 2o3f_A Putative HTH-type trans 21.1 36 0.0015 13.5 2.3 41 55-97 26-69 (111)
No 1
>1o0w_A Ribonuclease III, RNAse III; TM1102, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.00A {Thermotoga maritima} SCOP: a.149.1.1 d.50.1.1
Probab=100.00 E-value=0 Score=409.13 Aligned_cols=221 Identities=32% Similarity=0.421 Sum_probs=204.8
Q ss_pred CCHHHHHHHHCCCCCCHHHHHHHCCCHHHCC-------CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 5889999983696589899998424612126-------676654778874586886454787764104688789988888
Q gi|254780940|r 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISH-------SYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76 (227)
Q Consensus 4 ~~~~~l~~~lgy~f~~~~ll~~A~th~S~~~-------~~~~~~erLEflGDavL~~~v~~~l~~~~p~~~eG~lt~lr~ 76 (227)
..+++||++|||+|+|++||.+||||+||.. ....||||||||||+||+++|++|||.+||+.+||.||.+|+
T Consensus 19 ~~i~~le~~igy~F~n~~lL~~AlTH~S~~~~~~~~~~~~~~~~eRLEfLGDavL~~~v~~~l~~~~p~~~eg~lt~~r~ 98 (252)
T 1o0w_A 19 KIVEEFQKETGINFKNEELLFRALCHSSYANEQNQAGRKDVESNEKLEFLGDAVLELFVCEILYKKYPEAEVGDLARVKS 98 (252)
T ss_dssp HHHHHHHHHHCCCCSSHHHHHHHHBCHHHHHHHHHTTCTTCCCSHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
T ss_conf 99999999969843999999998067063444434334677547899998999999999999998688887131299999
Q ss_pred HHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCCCCC--CCCC
Q ss_conf 88744334545431387720010366312375313333326699999999641554220012210256431110--0013
Q gi|254780940|r 77 SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKS--GKFR 154 (227)
Q Consensus 77 ~lV~n~~La~~a~~lgl~~~l~~~~~~~~~~~~~~~~ilad~fEA~iGAiy~d~G~~~~~~~i~~~~~~~~~~~--~~~~ 154 (227)
.+|||++|+.+|..+||++|++.+++...+....+++++||+|||+|||||+|+|++.|+.|+.+++.+.+... ....
T Consensus 99 ~lv~~~~La~~a~~l~l~~~l~~~~~~~~~~~~~~~k~laD~fEAliGAiylD~g~~~~~~~v~~l~~~~l~~~~~~~~~ 178 (252)
T 1o0w_A 99 AAASEEVLAMVSRKMNLGKFLFLGKGEEKTGGRDRDSILADAFEALLAAIYLDQGYEKIKELFEQEFEFYIEKIMKGEML 178 (252)
T ss_dssp HHTSHHHHHHHHHHTTHHHHCBCCHHHHHTTGGGCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHCCHHHHHHHHHHCCHHHHHHCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 98187879999997377998762870433377643348878999999999981680465899999999999887644300
Q ss_pred CCHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCEEEEEEEECCEEEEEEEECCHHHHHHHHHHHHHHHCC
Q ss_conf 4525889875320223333431010207788845999999999899999968989999999999999748
Q gi|254780940|r 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 (227)
Q Consensus 155 ~dpK~~Lqe~~q~~~~~~P~Y~~~~~~g~~~~~~f~v~v~v~g~~~g~g~g~SkK~Ae~~AA~~AL~klg 224 (227)
.|||+.||||||+.+...|+|+++..+||+|.+.|.|+|+++|+.+|+|.|+|||+||+.||++||++|.
T Consensus 179 ~dpk~~L~e~~q~~~~~~p~y~~~~~~g~~~~~~f~v~v~i~~~~~~~G~G~SKK~Ae~~AA~~AL~~L~ 248 (252)
T 1o0w_A 179 FDYKTALQEIVQSEHKVPPEYILVRTEKNDGDRIFVVEVRVNGKTIATGKGRTKKEAEKEAARIAYEKLL 248 (252)
T ss_dssp SCHHHHHHHHHHHHHSSCCEEEEEEEECCTTSCEEEEEEEETTEEEEEEEESSHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHCCCCCEEEEEEECCCCCCCEEEEEEECCEEEEEEEECCHHHHHHHHHHHHHHHHH
T ss_conf 6755501787776405788558875116999951899999999999998848999999999999999998
No 2
>3n3w_A Ribonuclease III; nuclease domain, ribonuclase III, IDP90862, csgid, structura genomics; 2.21A {Campylobacter jejuni subsp}
Probab=100.00 E-value=0 Score=418.01 Aligned_cols=220 Identities=34% Similarity=0.506 Sum_probs=206.6
Q ss_pred CHHHHHHHHCCCCCCHHHHHHHCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 88999998369658989999842461212667665477887458688645478776410468878998888888744334
Q gi|254780940|r 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETC 84 (227)
Q Consensus 5 ~~~~l~~~lgy~f~~~~ll~~A~th~S~~~~~~~~~erLEflGDavL~~~v~~~l~~~~p~~~eG~lt~lr~~lV~n~~L 84 (227)
+++.||++|||+|+|++||.+||||+||... .|||||||||||||+++|++|||.+||+++||.||++|+.+|||++|
T Consensus 27 ~i~~le~~lgy~F~~~~LL~~AlTH~S~~~~--~~~erLEflGDavL~~~v~~~L~~~~p~~~eG~lt~lr~~lV~n~~L 104 (248)
T 3n3w_A 27 NIEKLEQSLTYEFKDKNLLIHALTHKSFKKS--YNNERLEFLGDAVLDLVVGEYLFHKFAKDAEGDLSKLRAALVNEKSF 104 (248)
T ss_dssp THHHHHHHHTCCCSSHHHHHHHTBCTTSBTT--BCSHHHHHHHHHHHHHHHHHHHHHHTTTCSCCCHHHHHHHHHSHHHH
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHCCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCHHHH
T ss_conf 1999999969842888899999657577988--88459999989999999999998418999888979999987388899
Q ss_pred HHHHHHCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCCCC--CCCCCCCHHHHHH
Q ss_conf 54543138772001036631237531333332669999999964155422001221025643111--0001345258898
Q gi|254780940|r 85 SQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQ 162 (227)
Q Consensus 85 a~~a~~lgl~~~l~~~~~~~~~~~~~~~~ilad~fEA~iGAiy~d~G~~~~~~~i~~~~~~~~~~--~~~~~~dpK~~Lq 162 (227)
+++|.++||+++++++..........+++++||+|||+|||||+|+|++.++.||.++|.+.... ......|||+.||
T Consensus 105 a~ia~~lgl~~~l~~~~~~~~~~~~~~~~ilad~fEAliGAiylD~G~~~~~~~v~~~~~~~l~~~~~~~~~~d~K~~L~ 184 (248)
T 3n3w_A 105 AKIANSLNLGDFILMSVAEENNGGKEKPSILSDALEAIIGAIHLEAGFEFAKTIALRLIEKNFPQIDAKILIKDYKTKLQ 184 (248)
T ss_dssp HHHHHHTTGGGTCBCCHHHHHTTGGGCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCC----------------
T ss_pred HHHHHHCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCH
T ss_conf 99998879833453064321257743266999999999876762478099999999988989999864103576103176
Q ss_pred HHHHCCCCCCCCCCEECCCCCCCCCEEEEEEEECCEEEEEEEECCHHHHHHHHHHHHHHHCCCC
Q ss_conf 7532022333343101020778884599999999989999996898999999999999974889
Q gi|254780940|r 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 (227)
Q Consensus 163 e~~q~~~~~~P~Y~~~~~~g~~~~~~f~v~v~v~g~~~g~g~g~SkK~Ae~~AA~~AL~klgi~ 226 (227)
||||++++..|+|+++.++||+|.+.|.|+|+++|..+|+|+|+|||+||+.||+.||++||.+
T Consensus 185 e~~q~~~~~~p~Y~~~~~~g~~~~~~f~v~v~i~g~~~g~g~g~sKK~Ae~~AA~~AL~~L~~l 248 (248)
T 3n3w_A 185 EITQGKIGQTPQYETVRAFGPDHLKQFEIALMLDGKELARAIAGSKKEAQQMAAKIALEKLGAL 248 (248)
T ss_dssp ----------------------------------------------------------------
T ss_pred HHHHHCCCCCCCEEEEEEECCCCCCEEEEEEEECCEEEEEEEECCHHHHHHHHHHHHHHHHCCC
T ss_conf 9997327899853467637789897499999999989999873899999999999999986849
No 3
>2a11_A Ribonuclease III, RNAse III; nuclease domain, structural genomics, PSI, protein structure initiative; 2.10A {Mycobacterium tuberculosis}
Probab=100.00 E-value=0 Score=395.05 Aligned_cols=220 Identities=33% Similarity=0.385 Sum_probs=200.7
Q ss_pred CHHHHHHHHCCCCCCHHHHHHHCCCHHHCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Q ss_conf 8899999836965898999984246121266--76654778874586886454787764104688789988888887443
Q gi|254780940|r 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHS--YQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82 (227)
Q Consensus 5 ~~~~l~~~lgy~f~~~~ll~~A~th~S~~~~--~~~~~erLEflGDavL~~~v~~~l~~~~p~~~eG~lt~lr~~lV~n~ 82 (227)
...+|+++|||.|+| +||.+||||+||.++ ...|||||||||||||+++|++|||.+||+++||.||.+|+.+|||+
T Consensus 6 ~~~~l~~~lg~~~~~-~Ll~~AlTH~S~~~~~~~~~~~ErLEfLGDavL~~~v~~~l~~~~p~~~~g~lt~lr~~lv~~~ 84 (242)
T 2a11_A 6 SRQPLLDALGVDLPD-ELLSLALTHRSYAYENGGLPTNERLEFLGDAVLGLTITDALFHRHPDRSEGDLAKLRASVVNTQ 84 (242)
T ss_dssp CCHHHHHHHTSCCCH-HHHHHHTBCHHHHHHTTSCCCTHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHSHH
T ss_pred HHHHHHHHHCCCCCH-HHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
T ss_conf 499999996898798-9999854787853458998760788757899999999999998789998347599999982378
Q ss_pred HHHHHHHHCCCCC---EEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCCCCC--CCCCCCH
Q ss_conf 3454543138772---0010366312375313333326699999999641554220012210256431110--0013452
Q gi|254780940|r 83 TCSQVARELDLAS---FIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDA 157 (227)
Q Consensus 83 ~La~~a~~lgl~~---~l~~~~~~~~~~~~~~~~ilad~fEA~iGAiy~d~G~~~~~~~i~~~~~~~~~~~--~~~~~dp 157 (227)
+|+.+|.++|+++ |+++++++.....+.++++++|+|||+|||||+|+|++.++.|+.++|.+.+... .....||
T Consensus 85 ~La~~A~~lgl~~~~~~~~~~~~~~~~~~~~~~kilaD~fEAliGAiylD~g~~~~~~~v~~l~~~~l~~~~~~~~~~d~ 164 (242)
T 2a11_A 85 ALADVARRLCAEGLGVHVLLGRGEANTGGADKSSILADGMESLLGAIYLQHGMEKAREVILRLFGPLLDAAPTLGAGLDW 164 (242)
T ss_dssp HHHHHHHHHSSSCSGGGCBCCHHHHHTTGGGCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTHHHHHHTTC-------
T ss_pred HHHHHHHHHCCCCCCCEEEECCCHHHCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 99999998385545515660462121488663028999999998896202205889999999999999754420234782
Q ss_pred HHHHHHHHHCCCCCCCCCCEECCCCCCCCCEEEEEEEECCEEEEEEEECCHHHHHHHHHHHHHHHCCCC
Q ss_conf 588987532022333343101020778884599999999989999996898999999999999974889
Q gi|254780940|r 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 (227)
Q Consensus 158 K~~Lqe~~q~~~~~~P~Y~~~~~~g~~~~~~f~v~v~v~g~~~g~g~g~SkK~Ae~~AA~~AL~klgi~ 226 (227)
|+.||||||+.+...|.|. +.++||+|++.|+|+|+++|+.+|+|+|+|||+|||+||+.||++|.++
T Consensus 165 K~~L~e~~q~~~~~~p~Y~-~~~~g~~~~~~F~v~v~i~~~~~g~G~g~skK~AEq~Aa~~alk~L~~l 232 (242)
T 2a11_A 165 KTSLQELTAARGLGAPSYL-VTSTGPDHDKEFTAVVVVMDSEYGSGVGRSKKEAEQKAAAAAWKALEVL 232 (242)
T ss_dssp ---------------------------------------------------------------------
T ss_pred HHHHHHHHHHHCCCCCEEE-EEEECCCCCCCEEEEEEECCEEEEEEEECCHHHHHHCCCHHHHHHHHHH
T ss_conf 0399999886078997699-9866699998289999999969999985889999728017799999864
No 4
>2nug_A Ribonuclease III, RNAse III; dsRNA, RNA interference, endonucleolytic cleavage, hydrolase/RNA complex; 1.70A {Aquifex aeolicus} SCOP: a.149.1.1 d.50.1.1 PDB: 1yyw_A 2nue_A 2nuf_A 1yyk_A 1yz9_A 1yyo_A 2ez6_A 1rc7_A 1i4s_A 1jfz_A 1rc5_A
Probab=100.00 E-value=0 Score=382.44 Aligned_cols=211 Identities=38% Similarity=0.567 Sum_probs=193.7
Q ss_pred CHHHHHHHHCCCCCCHHHHHHHCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 88999998369658989999842461212667665477887458688645478776410468878998888888744334
Q gi|254780940|r 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETC 84 (227)
Q Consensus 5 ~~~~l~~~lgy~f~~~~ll~~A~th~S~~~~~~~~~erLEflGDavL~~~v~~~l~~~~p~~~eG~lt~lr~~lV~n~~L 84 (227)
.++.||++|||+|+|++||.+||||+|+... .||||||||||+||+++|+++||.+||+.+||.||.+|+.+|||++|
T Consensus 3 ~l~~le~~lgy~f~~~~ll~~Alth~S~~~~--~~~erLEflGDavL~~~v~~~l~~~~p~~~eg~lt~~r~~lv~~~~l 80 (221)
T 2nug_A 3 MLEQLEKKLGYTFKDKSLLEKALTHVSYSKK--EHYETLEFLGDALVNFFIVDLLVQYSPNKREGFLSPLKAYLISEEFF 80 (221)
T ss_dssp CHHHHHHHHTCCCSSHHHHHHHHBCTTTCSS--SCSHHHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHTSHHHH
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHCCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 6999999989883888999999667577888--87368885489999999999999758899964105989998776089
Q ss_pred HHHHHHCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCC--CHHHHHCCCCCCCCC---CCCCCCCHHH
Q ss_conf 54543138772001036631237531333332669999999964155422--001221025643111---0001345258
Q gi|254780940|r 85 SQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEV--AGTFVDKYWKQRALK---SGKFRRDAKT 159 (227)
Q Consensus 85 a~~a~~lgl~~~l~~~~~~~~~~~~~~~~ilad~fEA~iGAiy~d~G~~~--~~~~i~~~~~~~~~~---~~~~~~dpK~ 159 (227)
+.+|..+||++|++.+++. .+++++||+|||+|||||+|+|++. ++.|+.++|.+.+.. ......|||+
T Consensus 81 a~~a~~~gl~~~~~~~~~~------~~~~~laD~fEA~iGAiylD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~ 154 (221)
T 2nug_A 81 NLLAQKLELHKFIRIKRGK------INETIIGDVFEALWAAVYIDSGRDANFTRELFYKLFKEDILSAIKEGRVKKDYKT 154 (221)
T ss_dssp HHHHHTTTGGGTCBSCTTC------CCHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHTTCSCCCHHH
T ss_pred HHHHHHCCCCCCCCCCCCC------CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
T ss_conf 9998842886324112463------2104787799999999976358531465999999999999987652110133689
Q ss_pred HHHHHHHCCCCCCCCCCEECCCCCCCCCEEEEEEEECCEEEEEEEECCHHHHHHHHHHHHHHHCC
Q ss_conf 89875320223333431010207788845999999999899999968989999999999999748
Q gi|254780940|r 160 ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 (227)
Q Consensus 160 ~Lqe~~q~~~~~~P~Y~~~~~~g~~~~~~f~v~v~v~g~~~g~g~g~SkK~Ae~~AA~~AL~klg 224 (227)
+||||||+.+...|.|+++..+||+|.+.|.|+|++++.. +.|.|+|||+||+.||++||++|.
T Consensus 155 ~L~e~~q~~~~~~p~y~~~~~~g~~~~~~f~v~v~~~~~~-~~G~G~sKK~Ae~~AA~~aL~~L~ 218 (221)
T 2nug_A 155 ILQEITQKRWKERPEYRLISVEGPHHKKKFIVEAKIKEYR-TLGEGKSKKEAEQRAAEELIKLLE 218 (221)
T ss_dssp HHHHHHHHHHSCCCEEEEEEEESCGGGCEEEEEEEETTEE-EEEEESSHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHCCCCCCCHHCCCCCCCCCCCEEEEEEEECCEE-EEEEECCHHHHHHHHHHHHHHHHH
T ss_conf 9999999738988521003345899995199999989989-999878999999999999999872
No 5
>3c4b_A Endoribonuclease dicer; RNAse, dsRNA binding protein, ATP-binding, endonuclease, helicase, hydrolase, nucleotide-binding, phosphoprotein; HET: MSE; 1.68A {Mus musculus} PDB: 3c4t_A 2eb1_A
Probab=100.00 E-value=0 Score=367.33 Aligned_cols=214 Identities=27% Similarity=0.360 Sum_probs=184.4
Q ss_pred CHHHHHHHHCCCCCCHHHHHHHCCCHHHCCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 88999998369658989999842461212667-66547788745868864547877641046887899888888874433
Q gi|254780940|r 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSY-QESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAET 83 (227)
Q Consensus 5 ~~~~l~~~lgy~f~~~~ll~~A~th~S~~~~~-~~~~erLEflGDavL~~~v~~~l~~~~p~~~eG~lt~lr~~lV~n~~ 83 (227)
.++.||++|||+|+|++||.+||||+||.... ..|||||||||||||+++|++|||.+||+++||.||.+|+.+|||++
T Consensus 14 ~~~~le~~lgy~F~~~~lL~~AlTH~S~~~~~~~~~yErLEfLGDavL~~~v~~~l~~~~p~~~eg~lt~~r~~lv~n~~ 93 (265)
T 3c4b_A 14 GFETFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTI 93 (265)
T ss_dssp THHHHHHHHTCCCSSHHHHHHHHBCTTCTTCCSSCCSHHHHHHHHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHSSHHH
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
T ss_conf 99999999598708889999982470637688886458899889999999999999976889982455999999976899
Q ss_pred HHHHHHHCCCCCEEEECCCC--------------------------------CCCCCCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 45454313877200103663--------------------------------1237531333332669999999964155
Q gi|254780940|r 84 CSQVARELDLASFIRVSSDL--------------------------------RKDVCSFMTSIQADVVESLIAALYLDGG 131 (227)
Q Consensus 84 La~~a~~lgl~~~l~~~~~~--------------------------------~~~~~~~~~~ilad~fEA~iGAiy~d~G 131 (227)
|+.+|.++||++|++.++.. ........++++||+|||+|||||+|+|
T Consensus 94 La~~a~~~gl~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~laD~~EAliGAiyld~G 173 (265)
T 3c4b_A 94 FASLAVKYDYHKYFKAVSPELFHVIDDFVKFQLEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSG 173 (265)
T ss_dssp HHHHHHHTTGGGTCBCCCHHHHHHHHHHHHHHHHHHC------------------CCSCCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHCCC
T ss_conf 99999986929999846837655567777654443100120144430110244306644304888899998878431068
Q ss_pred CC--CCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCEEEEEEEECCEEEEEEEECCHH
Q ss_conf 42--2001221025643111000134525889875320223333431010207788845999999999899999968989
Q gi|254780940|r 132 IE--VAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 (227)
Q Consensus 132 ~~--~~~~~i~~~~~~~~~~~~~~~~dpK~~Lqe~~q~~~~~~P~Y~~~~~~g~~~~~~f~v~v~v~g~~~g~g~g~SkK 209 (227)
++ .+..|+..++.+.+.. ....|||+.|||++|.. |.|......+++|++.|.|+|+++|..+++|.|+|||
T Consensus 174 ~~~~~v~~~~~~~l~~~~~~--~~~~d~k~~lqel~q~~----~~~~~~~~~~~~~~~~f~v~v~v~~~~~~~g~G~SkK 247 (265)
T 3c4b_A 174 MSLEVVWQVYYPMMQPLIEK--FSANVPRSPVRELLEME----PETAKFSPAERTYDGKVRVTVEVVGKGKFKGVGRSYR 247 (265)
T ss_dssp SCHHHHHHHHHHHHHHHHHH--HHHHSCCCHHHHHHHHC----TTTEEECCCEECTTSCEEEEEEETTTEEEEEEESSHH
T ss_pred CCHHHHHHHHHHHHHHHHHH--HHHCCCHHHHHHHHHHC----CCCCEECCCCCCCCCEEEEEEEECCEEEEEEEECCHH
T ss_conf 34999999988888777654--32200104899999847----8772232556788983999999997799999847999
Q ss_pred HHHHHHHHHHHHHCC
Q ss_conf 999999999999748
Q gi|254780940|r 210 AAEQVAAAEVLKREG 224 (227)
Q Consensus 210 ~Ae~~AA~~AL~klg 224 (227)
+||+.||++||++|.
T Consensus 248 ~Ae~~AA~~AL~~Lk 262 (265)
T 3c4b_A 248 IAKSAAARRALRSLK 262 (265)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
T ss_conf 999999999999987
No 6
>3o2r_A Ribonuclease III; structural genomics, center for structural genomics of infec diseases, csgid, nuclease domain, ribonuclase III; HET: MLZ; 1.25A {Campylobacter jejuni subsp} PDB: 3o2r_B*
Probab=100.00 E-value=1.3e-40 Score=268.63 Aligned_cols=141 Identities=34% Similarity=0.521 Sum_probs=132.5
Q ss_pred CHHHHHHHHCCCCCCHHHHHHHCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 88999998369658989999842461212667665477887458688645478776410468878998888888744334
Q gi|254780940|r 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETC 84 (227)
Q Consensus 5 ~~~~l~~~lgy~f~~~~ll~~A~th~S~~~~~~~~~erLEflGDavL~~~v~~~l~~~~p~~~eG~lt~lr~~lV~n~~L 84 (227)
++++||++|||+|+|++||.+||||+||... .+|||||||||+||+++++.+||.+||+.+||.+|.+|+.+|||++|
T Consensus 27 ~i~~le~~l~Y~F~n~~LL~~AlTh~S~~~~--~~nerLefLGD~vL~~~vs~~l~~~~p~~~~g~l~~~r~~lv~n~~L 104 (170)
T 3o2r_A 27 NIEKLEQSLTYEFKDKNLLIHALTHKSFKKS--YNNERLEFLGDAVLDLVVGEYLFHKFAKDAEGDLSKLRAALVNEKSF 104 (170)
T ss_dssp CHHHHHHHHTCCCSSHHHHHHHTBCTTSSTT--CCSHHHHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHSSHHHH
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHCCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 3999999979851888999999727687998--87389999899999999999999848887702489999998608789
Q ss_pred HHHHHHCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCC
Q ss_conf 545431387720010366312375313333326699999999641554220012210256431
Q gi|254780940|r 85 SQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRA 147 (227)
Q Consensus 85 a~~a~~lgl~~~l~~~~~~~~~~~~~~~~ilad~fEA~iGAiy~d~G~~~~~~~i~~~~~~~~ 147 (227)
+.+|.++||+++++++++......+.+++++||+|||+|||||+|+|++.|++|+.++|.+..
T Consensus 105 a~ia~~lgL~~~~~~~~~~~~~~~~~~~k~laD~~EAliGAIylD~G~~~a~~~i~~l~~~~l 167 (170)
T 3o2r_A 105 AKIANSLNLGDFILMSVAEENNGGKEKPSILSDALEAIIGAIHLEAGFEFAKTIALRLIEKNF 167 (170)
T ss_dssp HHHHHHTTGGGTCBCCHHHHHTTGGGCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHCCCCHHHHCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_conf 989998698267642732764388755308989999999999995788999999999999852
No 7
>2gsl_A Hypothetical protein; alpha-helical protein, structural genomics, PSI, protein structure initiative; 2.60A {Fusobacterium nucleatum subsp}
Probab=99.90 E-value=7.6e-25 Score=171.53 Aligned_cols=120 Identities=19% Similarity=0.146 Sum_probs=95.2
Q ss_pred CCCHHHCCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC------CEEEE
Q ss_conf 2461212667-6654778874586886454787764104688789988888887443345454313877------20010
Q gi|254780940|r 27 LTHSSISHSY-QESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLA------SFIRV 99 (227)
Q Consensus 27 ~th~S~~~~~-~~~~erLEflGDavL~~~v~~~l~~~~p~~~eG~lt~lr~~lV~n~~La~~a~~lgl~------~~l~~ 99 (227)
++|.+++++. ..|+++|||||||||+++|+++|| +|..+||.||++|+++||+++|+.++.++++. .+++.
T Consensus 1 m~~~~~~k~~~~~s~~~LeFLGDAVL~l~v~~~L~--~~~~~eg~Lt~~rs~lVs~~~la~i~~~l~~~l~~~~~~~~~~ 78 (137)
T 2gsl_A 1 MDNVDFSKDIRDYSGLELAFLGDAIWELEIRKYYL--QFGYNIPTLNKYVKAKVNAKYQSLIYKKIINDLDEEFKVIGKR 78 (137)
T ss_dssp ----CCCCTTTSCCHHHHHHHHHHHHHHHHHHHHT--TSCBCHHHHHHHHHHHHSHHHHHHHHHHHGGGSCHHHHHHHHH
T ss_pred CCCCCCCCCHHHHCHHHHHHHHHHHHHHHHHHHHH--CCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHCCHHHHHHHHC
T ss_conf 99742231687709457898879999999999987--4899978899999999289999999999735247789999873
Q ss_pred CCCCCCCCCC----CCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCCC
Q ss_conf 3663123753----133333266999999996415542200122102564311
Q gi|254780940|r 100 SSDLRKDVCS----FMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRAL 148 (227)
Q Consensus 100 ~~~~~~~~~~----~~~~ilad~fEA~iGAiy~d~G~~~~~~~i~~~~~~~~~ 148 (227)
|.+......+ ..++++||+|||+|||+|+|+|++.++.|+..+|.+.+.
T Consensus 79 grn~~~~~~~k~~~~~~~~lAd~fEAliGalYLd~~~e~~~~~l~~~~~~ele 131 (137)
T 2gsl_A 79 AKNSNIKTFPRSCTVMEYKEATALEAIIGAMYLLKKEEEIKKIINIVIKGELE 131 (137)
T ss_dssp HHC--CCSCCSSSCHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC-
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf 75644667766663689999889999999999819989999999999863643
No 8
>1u61_A Hypothetical protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 2.15A {Bacillus cereus} SCOP: a.149.1.1
Probab=99.90 E-value=1.4e-24 Score=169.82 Aligned_cols=113 Identities=19% Similarity=0.151 Sum_probs=93.8
Q ss_pred HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCC-------
Q ss_conf 1266766547788745868864547877641046887899888888874433454543138772001036631-------
Q gi|254780940|r 32 ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLR------- 104 (227)
Q Consensus 32 ~~~~~~~~~erLEflGDavL~~~v~~~l~~~~p~~~eG~lt~lr~~lV~n~~La~~a~~lgl~~~l~~~~~~~------- 104 (227)
......-|++.|||||||||+++|++|||.+ |..+||+||++|+.+||+++|+++|..++|++++..+..+.
T Consensus 4 ~~~~~~~~~~~LefLGDAVL~l~v~~~L~~~-~~~~eG~Lt~~r~~lVs~~~la~~a~~l~l~~~l~~~e~~~~~~grn~ 82 (138)
T 1u61_A 4 MIDAKQLNSLALAYMGDAVYEQYIRYHLLQK-GKVRPNQLHRLGTSFVSAKAQAKVVYHLLETAFLTEEEEAVLRRGRNA 82 (138)
T ss_dssp -CCTTTSCHHHHHHHHHHHHHHHHHHHHHHH-CCSCGGGHHHHHHHHHSHHHHHHHHHHHHHTTCSCHHHHHHHHHHTCC
T ss_pred CCCHHHCCHHHHHHHHHHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCHHHHCCCCCC
T ss_conf 2187660925567677999999999999982-999831799999999659999999998177023102403554177555
Q ss_pred -----CCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHCCCCC
Q ss_conf -----23753133333266999999996415542200122102564
Q gi|254780940|r 105 -----KDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQ 145 (227)
Q Consensus 105 -----~~~~~~~~~ilad~fEA~iGAiy~d~G~~~~~~~i~~~~~~ 145 (227)
.......++++||+|||+|||+|+|+|++.++.|+...+..
T Consensus 83 ~~~~~~~~~~~~~~~lad~fEAlIGalYLd~g~e~~~~l~~~~~~~ 128 (138)
T 1u61_A 83 NSGTVPKNTDVQTYRHSTAFEALIGYHHLLNNRERLDEIVYKAIAV 128 (138)
T ss_dssp CSSCCCTTCCHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf 5777667775026688679999999999917799999999999999
No 9
>2khx_A Ribonuclease 3; drosha, RNA binding domain, hydrolase, gene regulation, nuclear protein; NMR {Homo sapiens}
Probab=99.74 E-value=2.6e-18 Score=131.30 Aligned_cols=71 Identities=31% Similarity=0.354 Sum_probs=67.0
Q ss_pred CCHHHHHHHHH-----HCCCCCCCCCCEECCCCCCCCCEEEEEEEECCEEEEEEEECCHHHHHHHHHHHHHHHCCC
Q ss_conf 45258898753-----202233334310102077888459999999998999999689899999999999997488
Q gi|254780940|r 155 RDAKTELQEWA-----HAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 (227)
Q Consensus 155 ~dpK~~Lqe~~-----q~~~~~~P~Y~~~~~~g~~~~~~f~v~v~v~g~~~g~g~g~SkK~Ae~~AA~~AL~klgi 225 (227)
.||||+||||| |++...+|+|.+++++||+|++.|+|.|+++|..+++|.|+|||+||+.||+.||++|++
T Consensus 1 ~DpKs~LQE~~~~~~~q~~~~~lP~Y~~~~~~Gp~h~~~F~~~v~v~~~~~~~G~G~SKK~Aeq~AA~~aL~~l~~ 76 (85)
T 2khx_A 1 NDPKSQLQQCCLTLRTEGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEKYNF 76 (85)
T ss_dssp CCSCHHHHHHHHHCCCSSSCCCCCCEEECCCCCSSSCCCEEEEEEETTEECCCEEESSHHHHHHHHHHHHHTTCCS
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCEEEEEEEECCEEEEEECCCCHHHHHHHHHHHHHHHHCC
T ss_conf 9836899999878778646899985899871389888879999999997888306899999999999999997096
No 10
>1uhz_A Staufen (RNA binding protein) homolog 2; DSRM, staufen homolog 2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1
Probab=99.69 E-value=9.7e-17 Score=121.63 Aligned_cols=72 Identities=21% Similarity=0.268 Sum_probs=67.9
Q ss_pred CCCHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCEEEEEEEECCEEEEEEEECCHHHHHHHHHHHHHHHCCCC
Q ss_conf 3452588987532022333343101020778884599999999989999996898999999999999974889
Q gi|254780940|r 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 (227)
Q Consensus 154 ~~dpK~~Lqe~~q~~~~~~P~Y~~~~~~g~~~~~~f~v~v~v~g~~~g~g~g~SkK~Ae~~AA~~AL~klgi~ 226 (227)
..||+++||||||+++..+|+|+++.++||+|++.|+|.|.|++.. .+|.|+|||+||+.||+.||++||..
T Consensus 5 ~~nP~s~LqE~~Q~~~~~~P~Y~~~~~~G~~h~~~F~~~v~v~~~~-~~g~g~sKK~Ae~~AA~~aL~~L~~~ 76 (89)
T 1uhz_A 5 SSGPISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKVGNEV-ATGTGPNKKIAKKNAAEAMLLQLGYK 76 (89)
T ss_dssp SSCHHHHHHHHHHHTTSCCCEEEEEEEESCSTTCEEEEEEEETTEE-EEEEESSHHHHHHHHHHHHHHHHTSS
T ss_pred CCCCHHHHHHHHHHCCCCCCEEEEEEEECCCCCCEEEEEEEECCEE-EECCCCCHHHHHHHHHHHHHHHHCCC
T ss_conf 8896899999999669999858997734799886699999999996-00689879999999999999996778
No 11
>2cpn_A TAR RNA-binding protein 2; double-stranded RNA binding domain, DSRBD, DSRM., structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=99.67 E-value=2e-16 Score=119.71 Aligned_cols=74 Identities=32% Similarity=0.368 Sum_probs=68.7
Q ss_pred CCCCCCCHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCEEEEEEEECCEEEEEEEECCHHHHHHHHHHHHHHHCC
Q ss_conf 000134525889875320223333431010207788845999999999899999968989999999999999748
Q gi|254780940|r 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 (227)
Q Consensus 150 ~~~~~~dpK~~Lqe~~q~~~~~~P~Y~~~~~~g~~~~~~f~v~v~v~g~~~g~g~g~SkK~Ae~~AA~~AL~klg 224 (227)
......|||+.||||||+.+..+|+|+++.++||+|.+.|.|.|++++.. ++|.|+|||+||+.||+.||++|.
T Consensus 11 ~~~~~~npks~LqE~~q~~~~~~P~Y~~~~~~G~~h~~~F~~~v~v~~~~-~~g~g~sKK~Ae~~AA~~aL~~L~ 84 (89)
T 2cpn_A 11 PQQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFI-EIGSGTSKKLAKRNAAAKMLLRVS 84 (89)
T ss_dssp CCCCCCCHHHHHHHHHHHHTCCCCEEEEEEEECCSSSCEEEEEEEETTEE-EEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCEEEEEEEEEEEE-EECCCCCHHHHHHHHHHHHHHHHH
T ss_conf 76567886899999999759999948744013898886089999993257-641677799999999999999971
No 12
>3adj_A F21M12.9 protein; HYL1, miRNA processing, RNA binding protein, gene regulation; 3.00A {Arabidopsis thaliana} PDB: 2l2m_A
Probab=99.67 E-value=8.4e-17 Score=122.01 Aligned_cols=70 Identities=26% Similarity=0.212 Sum_probs=66.9
Q ss_pred CCHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCEEEEEEEECCEEEEEEEECCHHHHHHHHHHHHHHHCC
Q ss_conf 4525889875320223333431010207788845999999999899999968989999999999999748
Q gi|254780940|r 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 (227)
Q Consensus 155 ~dpK~~Lqe~~q~~~~~~P~Y~~~~~~g~~~~~~f~v~v~v~g~~~g~g~g~SkK~Ae~~AA~~AL~klg 224 (227)
-+||+.||||||+.+..+|.|+++.++||+|++.|+|.|+++|..+++|.|+|||+||+.||+.||+.|.
T Consensus 4 ~~yKs~LqE~~qk~~~~~P~Y~~~~~~G~~h~~~F~~~v~v~~~~~~~g~g~sKK~Aeq~AA~~aL~~L~ 73 (76)
T 3adj_A 4 GLCKNLLQEYAQKMNYAIPLYQCQKVETLGRVTQFTCTVEIGGIKYTGAATRTKKDAEISAGRTALLAIQ 73 (76)
T ss_dssp HHHHHHHHHHHHTTTCCCCEEEEEEEECSSSCEEEEEEEEETTEEEECCCBSSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCEEEEEEEECCEEEEECCCCCHHHHHHHHHHHHHHHHH
T ss_conf 4589999999997499999289500007888976999999999999962788489999999999999998
No 13
>1whn_A Hypothetical protein riken cDNA 2310016K04; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1
Probab=99.66 E-value=2.1e-16 Score=119.53 Aligned_cols=85 Identities=25% Similarity=0.200 Sum_probs=69.9
Q ss_pred HHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCEEEEEEEECCEEEEEEEE-CCHHHHHHHHHH
Q ss_conf 2102564311100013452588987532022333343101020778884599999999989999996-898999999999
Q gi|254780940|r 139 VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD-CSKRAAEQVAAA 217 (227)
Q Consensus 139 i~~~~~~~~~~~~~~~~dpK~~Lqe~~q~~~~~~P~Y~~~~~~g~~~~~~f~v~v~v~g~~~g~g~g-~SkK~Ae~~AA~ 217 (227)
|...+....-.......|||+.||||||+++..+|.|+++.+ .|++.|+|.|.|+|..+++|.| +|||+|||.||+
T Consensus 10 vi~~~~~~~r~~~~~~~~PKs~LqE~~Qk~~~~~P~Y~~~~~---~~~~~F~~~V~i~g~~~~~~~g~~SKK~AEq~AA~ 86 (128)
T 1whn_A 10 IIKMAIRFDRRAYPPQITPKMCLLEWCRREKLPQPVYETVQR---TIDRMFCSVVTVAEQKYQSTLWDKSKKLAEQTAAI 86 (128)
T ss_dssp SEEECCCCCGGGSCTTCCHHHHHHHHHHHTTCCCCCCCEEEC---SSSCCEEEEEEETTEEEEESSCBSSHHHHHHHHHH
T ss_pred EEEEEHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCEEEEECC---CCCCCEEEEEEECCEEEECCCCCCCHHHHHHHHHH
T ss_conf 688543221331888898179999999974999988997315---68887589999999983047775538899999999
Q ss_pred HHHHHCCCC
Q ss_conf 999974889
Q gi|254780940|r 218 EVLKREGIW 226 (227)
Q Consensus 218 ~AL~klgi~ 226 (227)
.||+.||+-
T Consensus 87 ~AL~~Lg~~ 95 (128)
T 1whn_A 87 VCLRSQGLP 95 (128)
T ss_dssp HHHHHHTCS
T ss_pred HHHHHCCCC
T ss_conf 999981998
No 14
>3adl_A RISC-loading complex subunit tarbp2; TRBP2, miRNA processing, gene regulation-RNA complex; 2.20A {Homo sapiens}
Probab=99.66 E-value=2.7e-16 Score=118.92 Aligned_cols=76 Identities=32% Similarity=0.290 Sum_probs=69.4
Q ss_pred CCCCCCCHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCEEEEEEEECCEEEEEEEECCHHHHHHHHHHHHHHHCCCC
Q ss_conf 00013452588987532022333343101020778884599999999989999996898999999999999974889
Q gi|254780940|r 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 (227)
Q Consensus 150 ~~~~~~dpK~~Lqe~~q~~~~~~P~Y~~~~~~g~~~~~~f~v~v~v~g~~~g~g~g~SkK~Ae~~AA~~AL~klgi~ 226 (227)
..+...||+++||||||+++..+|.|+++.++||+|++.|+|.|.+++. .++|.|+|||+||+.||+.||++|+-+
T Consensus 10 ~~p~~~~~vs~LqE~~qk~~~~~P~Y~~~~~~G~~h~~~F~~~v~v~~~-~~~g~g~SKK~Aeq~AA~~aL~~L~~l 85 (88)
T 3adl_A 10 LVPRGSHEVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERF-IEIGSGTSKKLAKRNAAAKMLLRVHTV 85 (88)
T ss_dssp CCCTTCCHHHHHHHHHHHTTCCCCEEEEEEEESCTTSCEEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCCCEEEEEEEEEEE-EEEECCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 6689989289999999976999987898542499889869999999304-888658989999999999999997337
No 15
>1di2_A XLRBPA, double stranded RNA binding protein A; protein-RNA complex, protein-RNA interactions, RNA-bining protein; 1.90A {Xenopus laevis} SCOP: d.50.1.1
Probab=99.64 E-value=3.7e-16 Score=118.05 Aligned_cols=67 Identities=34% Similarity=0.439 Sum_probs=64.0
Q ss_pred HHHHHHHHHHCCCCCCCCCCEECCCCCCCCCEEEEEEEECCEEEEEEEECCHHHHHHHHHHHHHHHCC
Q ss_conf 25889875320223333431010207788845999999999899999968989999999999999748
Q gi|254780940|r 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 (227)
Q Consensus 157 pK~~Lqe~~q~~~~~~P~Y~~~~~~g~~~~~~f~v~v~v~g~~~g~g~g~SkK~Ae~~AA~~AL~klg 224 (227)
||+.||||||+.+..+|.|.++.++||+|++.|.|.|.++|.. ++|.|+|||+||+.||++||++|.
T Consensus 2 P~~~LqE~~q~~~~~~P~Y~~~~~~g~~h~~~F~~~v~v~~~~-~~g~g~sKK~Aeq~AA~~aL~~Lk 68 (69)
T 1di2_A 2 PVGSLQELAVQKGWRLPEYTVAQESGPPHKREFTITCRVETFV-ETGSGTSKQVAKRVAAEKLLTKFK 68 (69)
T ss_dssp HHHHHHHHHHHHTCCCCEEEEEEEESCGGGCEEEEEEEETTEE-EEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHCCCCCCEEEEEEEECCCCCCEEEEEEEEECEE-EECCCCCHHHHHHHHHHHHHHHHC
T ss_conf 8489999999669999849999857899897799999993317-652789799999999999999833
No 16
>2dix_A Interferon-inducible double stranded RNA- dependent protein kinase activator A; structure genomics, DSRM domain, hypothetical protein PRKRA; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=99.61 E-value=7.7e-16 Score=116.12 Aligned_cols=71 Identities=21% Similarity=0.248 Sum_probs=65.1
Q ss_pred CCCCCHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCEEEEEEEECCEEEEEEEECCHHHHHHHHHHHHHHHCC
Q ss_conf 0134525889875320223333431010207788845999999999899999968989999999999999748
Q gi|254780940|r 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 (227)
Q Consensus 152 ~~~~dpK~~Lqe~~q~~~~~~P~Y~~~~~~g~~~~~~f~v~v~v~g~~~g~g~g~SkK~Ae~~AA~~AL~klg 224 (227)
...+||++.||||||+.+. .|.|+++.++||+|+++|.|.|.+++. +++|.|+|||+||+.||+.||+.|.
T Consensus 5 ~~~K~pis~L~E~~qk~~~-~p~Y~~~~~~G~~h~~~F~~~v~v~~~-~~~g~g~sKK~Ak~~AA~~al~~L~ 75 (84)
T 2dix_A 5 SSGKTPIQVLHEYGMKTKN-IPVYECERSDVQIHVPTFTFRVTVGDI-TCTGEGTSKKLAKHRAAEAAINILK 75 (84)
T ss_dssp CCCCCHHHHHHHHHHHTTC-CCEEEEEEEECSSSSCEEEEEEEETTE-EEEECSSCTTHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHCCC-CCEEEEEEEECCCCCCEEEEEEEECCE-EEEECCCCHHHHHHHHHHHHHHHHH
T ss_conf 7898988999999996899-988999985889888649999998999-9984358889999999999999997
No 17
>1x47_A DGCR8 protein; structural genomics, DSRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=99.61 E-value=2.2e-15 Score=113.29 Aligned_cols=71 Identities=24% Similarity=0.290 Sum_probs=64.6
Q ss_pred CCCCCCHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCEEEEEEEECCEEEEEEEECCHHHHHHHHHHHHHHHC
Q ss_conf 0013452588987532022333343101020778884599999999989999996898999999999999974
Q gi|254780940|r 151 GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 (227)
Q Consensus 151 ~~~~~dpK~~Lqe~~q~~~~~~P~Y~~~~~~g~~~~~~f~v~v~v~g~~~g~g~g~SkK~Ae~~AA~~AL~kl 223 (227)
++..+|||+.||||||+.+...|.|+++...|++ +.|.|.|.++|..+++|.|+|||+||+.||+.||++|
T Consensus 12 ~~~~K~p~s~LqE~~Qk~~~~~P~Y~~~~~~g~~--~~F~~~V~v~g~~~~~g~g~sKK~Aeq~AA~~AL~~L 82 (98)
T 1x47_A 12 NPNGKSEVCILHEYMQRVLKVRPVYNFFECENPS--EPFGASVTIDGVTYGSGTASSKKLAKNKAARATLEIL 82 (98)
T ss_dssp CTTCCCHHHHHHHHHHHHTCSCCEEEEEECSSSS--CCEEEEEEETTEEEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCC--CCEEEEEEECCEEEECCCCCCHHHHHHHHHHHHHHHH
T ss_conf 9889898899999999839999858985368998--8889999999999734788889999999999999998
No 18
>1uil_A Double-stranded RNA-binding motif; structural genomics, DSRM, riken structural genomics/proteomics initiative, RSGI RNA binding protein; NMR {Mus musculus} SCOP: d.50.1.1
Probab=99.60 E-value=9.6e-16 Score=115.52 Aligned_cols=74 Identities=24% Similarity=0.315 Sum_probs=63.2
Q ss_pred CCCCCCHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCEEEEEEEE-----CCEEEEEEEECCHHHHHHHHHHHHHHHC--
Q ss_conf 001345258898753202233334310102077888459999999-----9989999996898999999999999974--
Q gi|254780940|r 151 GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI-----SGLAPAQGMDCSKRAAEQVAAAEVLKRE-- 223 (227)
Q Consensus 151 ~~~~~dpK~~Lqe~~q~~~~~~P~Y~~~~~~g~~~~~~f~v~v~v-----~g~~~g~g~g~SkK~Ae~~AA~~AL~kl-- 223 (227)
++...|||++||||||+++. +|.|.+ ..+||+|+++|+|.|.+ ++..+++|.|+|||+||+.||+.+|++|
T Consensus 22 ~~ti~N~Ks~LqE~~Qk~k~-~p~Y~i-~~~Gp~h~~~F~~~v~v~~~~~~~~~~~~G~G~sKK~AEq~AA~~~l~~L~~ 99 (113)
T 1uil_A 22 NWTLENAKARLNQYFQKEKI-QGEYKY-TQVGPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKLAAQSCALSLVRQLYH 99 (113)
T ss_dssp CCCHHHHHHHHHHHHHHSCC-CCCCEE-EEESCSTTCEEEEEEEEEETTTTEEEEEECCCSSHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHCCC-CCCEEE-EEECCCCCCCEEEEEEEEEEECCCEEEEEECCCCHHHHHHHHHHHHHHHHHH
T ss_conf 97110789999999996698-997498-6516888998899999975623880688744160999999999999999997
Q ss_pred -CCC
Q ss_conf -889
Q gi|254780940|r 224 -GIW 226 (227)
Q Consensus 224 -gi~ 226 (227)
|++
T Consensus 100 lg~i 103 (113)
T 1uil_A 100 LGVI 103 (113)
T ss_dssp HTSS
T ss_pred CCCC
T ss_conf 5986
No 19
>2l2n_A Hyponastic leave 1; DSRBD, miRNA, RNA binding protein, plant protein; NMR {Arabidopsis thaliana}
Probab=99.59 E-value=8.3e-16 Score=115.92 Aligned_cols=71 Identities=30% Similarity=0.315 Sum_probs=64.8
Q ss_pred CCCCHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCEEEEEEEECCEEEEEEEE-CCHHHHHHHHHHHHHHHCC
Q ss_conf 13452588987532022333343101020778884599999999989999996-8989999999999999748
Q gi|254780940|r 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD-CSKRAAEQVAAAEVLKREG 224 (227)
Q Consensus 153 ~~~dpK~~Lqe~~q~~~~~~P~Y~~~~~~g~~~~~~f~v~v~v~g~~~g~g~g-~SkK~Ae~~AA~~AL~klg 224 (227)
...|||+.||||||+++..+|.|+++. +||+|++.|+|.|+++|..++.|.| +|||+||+.||+.||+.|+
T Consensus 15 ~~~~yKs~LqE~~Qk~~~~~P~Y~~~~-~G~~h~~~F~~~v~v~~~~~~~~~~~~sKK~Aeq~AA~~aL~~L~ 86 (103)
T 2l2n_A 15 NCYVFKSRLQEYAQKYKLPTPVYEIVK-EGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQSAAEVALRELA 86 (103)
T ss_dssp ----CTTHHHHHHHHTTCCCCEEEEEE-ESCSSSCEEEEEEEETTEEEECCSCBSSHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHCCCCCCEEEEEE-ECCCCCCEEEEEEEECCEEEEECCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 476879999999997499998599976-178878879999999999987037779799999999999999987
No 20
>1x49_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1
Probab=99.59 E-value=1.2e-15 Score=115.03 Aligned_cols=69 Identities=26% Similarity=0.204 Sum_probs=64.6
Q ss_pred CCHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCEEEEEEEECCEEEEEEEECCHHHHHHHHHHHHHHHCC
Q ss_conf 4525889875320223333431010207788845999999999899999968989999999999999748
Q gi|254780940|r 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 (227)
Q Consensus 155 ~dpK~~Lqe~~q~~~~~~P~Y~~~~~~g~~~~~~f~v~v~v~g~~~g~g~g~SkK~Ae~~AA~~AL~klg 224 (227)
.+||++||||||+++. .|.|+++.++||+|++.|+|.|+|+|..+++|.|+|||+||+.||+.||+.|.
T Consensus 14 ~~y~s~L~E~~Qk~~~-~~~y~~~~~~G~~h~~~F~~~v~v~~~~~~~g~g~sKK~Ae~~AA~~aL~~L~ 82 (97)
T 1x49_A 14 GFYMDKLNKYRQMHGV-AITYKELSTSGPPHDRRFTFQVLIDEKEFPEAKGRSKQEARNAAAKLAVDILD 82 (97)
T ss_dssp THHHHHHHHHHHHHTC-CEEEEEEEEESCSSSCEEEEEEEESSCCCCCEEESSHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHCCC-CCEEEEEEEECCCCCCEEEEEEEECCEEEECCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 3699999999987599-97189987007987733789998542557335789899999999999999997
No 21
>1t4o_A Ribonuclease III; RNT1P, DSRBD, RNA-binding, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: d.50.1.1 PDB: 1t4l_B
Probab=99.59 E-value=1.4e-15 Score=114.50 Aligned_cols=76 Identities=20% Similarity=0.182 Sum_probs=66.0
Q ss_pred CCCCCCCCHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCEEEEEEEE-CCEEEEEEEECCHHHHHHHHHHHHHHHCCCC
Q ss_conf 10001345258898753202233334310102077888459999999-9989999996898999999999999974889
Q gi|254780940|r 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI-SGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 (227)
Q Consensus 149 ~~~~~~~dpK~~Lqe~~q~~~~~~P~Y~~~~~~g~~~~~~f~v~v~v-~g~~~g~g~g~SkK~Ae~~AA~~AL~klgi~ 226 (227)
..+.++.|+|+.||+|||..+. .|+|+++. +|++|++.|.|.|.+ ++..+|+|.|+|||+||+.||+.||++++++
T Consensus 2 ~~~~id~n~Ks~L~e~~q~~~l-~P~Y~~~~-~~~~~~~~f~v~~~i~~~~~~g~G~G~SKK~AEq~AA~~ALen~~~~ 78 (117)
T 1t4o_A 2 KTDKLDMNAKRQLYSLIGYASL-RLHYVTVK-KPTAVDPNSIVECRVGDGTVLGTGVGRNIKIAGIRAAENALRDKKML 78 (117)
T ss_dssp -CCCCCTTHHHHHHHHHCCGGG-CCEEEEEE-CCCSSCCCEEEEEECTTCCEEEEEEESSHHHHHHHHHHHHHHCHHHH
T ss_pred CCCCCCCCHHHHHHHHHHCCCC-CCEEEEEE-ECCCCCCCEEEEEEEECCCEEEECCCCCHHHHHHHHHHHHHHCCHHH
T ss_conf 7764786899999999803899-83689976-24877875799999967968887289999999999999999755578
No 22
>2yt4_A Protein DGCR8; DSRBD, RNA binding domain, RNA binding protein; 2.60A {Homo sapiens}
Probab=99.57 E-value=7e-15 Score=110.21 Aligned_cols=68 Identities=16% Similarity=0.169 Sum_probs=60.1
Q ss_pred CCCHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCEEEEEEEECCEEEEEEEECCHHHHHHHHHHHHHHHC
Q ss_conf 3452588987532022333343101020778884599999999989999996898999999999999974
Q gi|254780940|r 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 (227)
Q Consensus 154 ~~dpK~~Lqe~~q~~~~~~P~Y~~~~~~g~~~~~~f~v~v~v~g~~~g~g~g~SkK~Ae~~AA~~AL~kl 223 (227)
..+|.+.|+|++| +...+|.|.++.+.|++|.+.|+|.|.|++.. .+|.|+|||.|++.||+.||++|
T Consensus 129 ~~nPi~~L~e~~q-r~~~~p~~~~~~e~g~~h~~~f~~~~~vg~~~-~~G~g~sKK~AKq~AA~~mL~~L 196 (232)
T 2yt4_A 129 LLSPYQILHECLK-RNHGMGDTSIKFEVVPGKNQKSEYVMACGKHT-VRGWCKNKRVGKQLASQKILQLL 196 (232)
T ss_dssp CCCHHHHHHHHHH-TSSSCCCEEEECC------CCEEEEEEETTEE-EEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHH-CCCCCCCEEEEECCCCCCCCEEEEEEEECCEE-EEEEECCHHHHHHHHHHHHHHHH
T ss_conf 8995789999986-13688873788605888785279999989999-99875763899999999999985
No 23
>1t4n_A Ribonuclease III; DSRBD, RNA-binding, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.50.1.1
Probab=99.57 E-value=1.2e-15 Score=114.97 Aligned_cols=74 Identities=19% Similarity=0.177 Sum_probs=62.6
Q ss_pred CCCCCCHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCEEEEEEEE-CCEEEEEEEECCHHHHHHHHHHHHHHHCCCC
Q ss_conf 001345258898753202233334310102077888459999999-9989999996898999999999999974889
Q gi|254780940|r 151 GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI-SGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 (227)
Q Consensus 151 ~~~~~dpK~~Lqe~~q~~~~~~P~Y~~~~~~g~~~~~~f~v~v~v-~g~~~g~g~g~SkK~Ae~~AA~~AL~klgi~ 226 (227)
+.++.|||++||||||..+. .|.|.++.+ |+++.+.|.|.|.+ ++..+|+|.|+|||+|||+||+.||++++++
T Consensus 2 ~~id~naKs~L~e~~q~~~l-~P~Y~~~~~-~~~~~~~f~v~~~v~~~~~~~~G~G~SKK~AEq~AA~~aLe~~~~i 76 (94)
T 1t4n_A 2 DKLDMNAKRQLYSLIGYASL-RLHYVTVKK-PTAVDPNSIVECRVGDGTVLGTGVGRNIKIAGIRAAENALRDKKML 76 (94)
T ss_dssp CSSCHHHHHHHHHHTCSSSS-CCEEEECCC-CSSSCCSEEEEEECSSSCEEEEEEESSHHHHHHHHHHHHHHCHHHH
T ss_pred CCCCCCHHHHHHHHHHCCCC-CCEEEEEEC-CCCCCCCEEEEEEEECCEEEEEECCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 84567889999999824899-966999740-6878997999999948848999646879999999999999703667
No 24
>3adg_A F21M12.9 protein; HYL1, miRNA processing mechanism, RNA binding protein, gene regulation; 1.70A {Arabidopsis thaliana} PDB: 3adi_A
Probab=99.57 E-value=3.4e-15 Score=112.13 Aligned_cols=69 Identities=30% Similarity=0.339 Sum_probs=63.2
Q ss_pred CCHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCEEEEEEEECCEEEEEEE-ECCHHHHHHHHHHHHHHHCC
Q ss_conf 45258898753202233334310102077888459999999998999999-68989999999999999748
Q gi|254780940|r 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQVAAAEVLKREG 224 (227)
Q Consensus 155 ~dpK~~Lqe~~q~~~~~~P~Y~~~~~~g~~~~~~f~v~v~v~g~~~g~g~-g~SkK~Ae~~AA~~AL~klg 224 (227)
.+||+.||||||+++..+|.|.+++ +||+|++.|.|.|.++|..++.+. |+|||+||+.||+.||++|+
T Consensus 3 ~~yKs~LqE~~qk~~~~~P~Y~~~~-~g~~h~~~F~~~v~i~~~~~~~~~~~~sKK~Aeq~AA~~aL~~L~ 72 (73)
T 3adg_A 3 HVFKSRLQEYAQKYKLPTPVYEIVK-EGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQSAAEVALRELA 72 (73)
T ss_dssp CSHHHHHHHHHHHTTCCCCEEEEEE-ESSTTSCEEEEEEEETTEEEECCSCBSSHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHCCCCCCEEEEEE-ECCCCCCEEEEEEEECCEEEECCCCCCCHHHHHHHHHHHHHHHHC
T ss_conf 7479999999997499998699987-379988728999999998987436769799999999999999856
No 25
>1x48_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1
Probab=99.56 E-value=7.8e-15 Score=109.92 Aligned_cols=67 Identities=19% Similarity=0.210 Sum_probs=61.3
Q ss_pred CCHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCEEEEEEEECCEEEEEEEECCHHHHHHHHHHHHHHHC
Q ss_conf 452588987532022333343101020778884599999999989999996898999999999999974
Q gi|254780940|r 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 (227)
Q Consensus 155 ~dpK~~Lqe~~q~~~~~~P~Y~~~~~~g~~~~~~f~v~v~v~g~~~g~g~g~SkK~Ae~~AA~~AL~kl 223 (227)
.|||++||||||++... +.|.++ ++||+|++.|+|.|.|+|..+++|.|+|||+||+.||+.||++|
T Consensus 6 ~~Y~s~L~E~~Qk~~~~-~~~~~~-e~g~~h~~~F~~~v~i~~~~~~~g~G~sKK~Aeq~AA~~Al~~L 72 (88)
T 1x48_A 6 SGYIGLVNSFAQKKKLS-VNYEQC-EPNSELPQRFICKCKIGQTMYGTGSGVTKQEAKQLAAKEAYQKL 72 (88)
T ss_dssp SCHHHHHHHHHHHTTCC-EEEEEC-CCSSSSSCCEEEEEEESSCEEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHCCC-CCEEEE-EECCCCCCCEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHH
T ss_conf 66999999999986899-883886-11799997489999994489712688757899999999999999
No 26
>1whq_A RNA helicase A; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Mus musculus} SCOP: d.50.1.1
Probab=99.54 E-value=5.6e-15 Score=110.82 Aligned_cols=68 Identities=22% Similarity=0.381 Sum_probs=61.3
Q ss_pred CCCHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCEEEEEEEECCEE-EEEEEECCHHHHHHHHHHHHHHHC
Q ss_conf 3452588987532022333343101020778884599999999989-999996898999999999999974
Q gi|254780940|r 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLKRE 223 (227)
Q Consensus 154 ~~dpK~~Lqe~~q~~~~~~P~Y~~~~~~g~~~~~~f~v~v~v~g~~-~g~g~g~SkK~Ae~~AA~~AL~kl 223 (227)
-.++|+.||||||+++. .|.|++. ++||+|+++|.|.|.|+|.. +++|.|+|||+||+.||+.||+.|
T Consensus 5 ~~~~Ks~LqE~~qk~k~-~P~Y~~~-~~g~~h~~~F~~~v~v~g~~~~~~g~g~sKK~Aeq~AA~~al~~L 73 (99)
T 1whq_A 5 SSGIKNFLYAWCGKRKM-TPAYEIR-AVGNKNRQKFMCEVRVEGFNYAGMGNSTNKKDAQSNAARDFVNYL 73 (99)
T ss_dssp CCSSHHHHHHHHHHTTC-CCEEEEE-EEECSSSEEEEEEEECTTCSCCEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHCCC-CCEEEEE-CCCCCCCCEEEEEEEECCEECCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 87677999999984799-9889860-236898987999999878351255777649999999999999999
No 27
>1qu6_A Protein kinase PKR; dsRNA-binding domain, solution structure, transferase; NMR {Homo sapiens} SCOP: d.50.1.1 d.50.1.1
Probab=99.52 E-value=5e-15 Score=111.11 Aligned_cols=70 Identities=19% Similarity=0.093 Sum_probs=62.0
Q ss_pred CCCCCHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCEEEEEEEECCEEEEEEEECCHHHHHHHHHHHHHHHC
Q ss_conf 013452588987532022333343101020778884599999999989999996898999999999999974
Q gi|254780940|r 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 (227)
Q Consensus 152 ~~~~dpK~~Lqe~~q~~~~~~P~Y~~~~~~g~~~~~~f~v~v~v~g~~~g~g~g~SkK~Ae~~AA~~AL~kl 223 (227)
....||++.|+||||+.+. .|.|.+. .+||+|.+.|+|.|.++|..+++|.|+|||+|++.||+.||++|
T Consensus 101 ~~~~n~~~~L~e~~qk~~~-~~~~~~~-~~g~~~~~~f~~~v~v~~~~~~~g~g~sKK~Akq~AA~~aL~~L 170 (179)
T 1qu6_A 101 LSMGNYIGLINRIAQKKRL-TVNYEQC-ASGVHGPEGFHYKCKMGQKEYSIGTGSTKQEAKQLAAKLAYLQI 170 (179)
T ss_dssp CCCCCCHHHHHHHHHHSCC-EEEEEEE-EECSSSSSEEEEEEEEETTBCCEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHCCC-CCCEEEE-EECCCCCCEEEEEEEECCEEEEEEEECCHHHHHHHHHHHHHHHH
T ss_conf 5578846899999875399-9987999-50688887078999999999877861999999999999999998
No 28
>1ekz_A DSRBDIII, maternal effect protein (staufen); structure, protein/RNA, protein DSRBD, RNA hairpin; NMR {Drosophila melanogaster} SCOP: d.50.1.1 PDB: 1stu_A
Probab=99.51 E-value=3.8e-15 Score=111.86 Aligned_cols=71 Identities=17% Similarity=0.246 Sum_probs=65.1
Q ss_pred CCCCCHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCEEEEEEEECCEEEEEEEECCHHHHHHHHHHHHHHHCC
Q ss_conf 0134525889875320223333431010207788845999999999899999968989999999999999748
Q gi|254780940|r 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 (227)
Q Consensus 152 ~~~~dpK~~Lqe~~q~~~~~~P~Y~~~~~~g~~~~~~f~v~v~v~g~~~g~g~g~SkK~Ae~~AA~~AL~klg 224 (227)
...+||++.||||||+++.. |.|.++.++||+|++.|+|.|.+++. .++|.|+|||+||+.||+.||++|.
T Consensus 4 ~~~k~pvs~L~E~~qk~~~~-~~y~~v~~~G~~h~~~F~~~v~~~~~-~~~g~g~sKK~A~~~AA~~al~~L~ 74 (76)
T 1ekz_A 4 GDKKSPISQVHEIGIKRNMT-VHFKVLREEGPAHMKNFITACIVGSI-VTEGEGNGKKVSKKRAAEKMLVELQ 74 (76)
T ss_dssp CCCSCHHHHHHHHHHHTTCC-CEEEESSSCCSSSCSCSSEEEEETTE-EEEECCCSTTSSSHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHCCCC-CEEEEEEEECCCCCCEEEEEEEECCE-EEECCCCHHHHHHHHHHHHHHHHHH
T ss_conf 77889779999999967989-73899863179888379999998989-7524646199999999999999997
No 29
>2qvw_A GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral twin, hydrolase; 3.00A {Giardia intestinalis} PDB: 2ffl_A
Probab=99.48 E-value=9.5e-14 Score=103.24 Aligned_cols=104 Identities=26% Similarity=0.425 Sum_probs=92.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCHH
Q ss_conf 65477887458688645478776410468878998888888744334545431387720010366312375313333326
Q gi|254780940|r 38 ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 (227)
Q Consensus 38 ~~~erLEflGDavL~~~v~~~l~~~~p~~~eG~lt~lr~~lV~n~~La~~a~~lgl~~~l~~~~~~~~~~~~~~~~ilad 117 (227)
+-+||||.|||+||+|+|+..|...||+.+.|.|.++++.+|.|++|..+.+.+||++...+++.... +.|..||
T Consensus 332 difqrlellgdavlgfivtarllclfp~asigtlvelkmelvrne~ln~l~~~lglpqlae~sn~l~a-----~sktwad 406 (756)
T 2qvw_A 332 DVFQRLELLGDAVLGFIVTARLLCLFPDASVGTLVELKMELVRNEALNYLVQTLGLPQLAEFSNNLVA-----KSKTWAD 406 (756)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHSHHHHHHHHHHTTCTTTCBCCSCC-------CCCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH-----HCCCHHH
T ss_conf 79999987645677889886787426786413399999999987889999997084689999877776-----1240899
Q ss_pred HHHHHHHHHHHC-CCCCCCHHHHHCCCCCC
Q ss_conf 699999999641-55422001221025643
Q gi|254780940|r 118 VVESLIAALYLD-GGIEVAGTFVDKYWKQR 146 (227)
Q Consensus 118 ~fEA~iGAiy~d-~G~~~~~~~i~~~~~~~ 146 (227)
++|-++|.||.. .|+..|+.|+.+-+..+
T Consensus 407 myeeivgsiftgpngi~gceefla~t~~~p 436 (756)
T 2qvw_A 407 MYEEIVGSIFTGPNGIYGCEEFLAKTLMSP 436 (756)
T ss_dssp HHHHHHHHHHHSTTHHHHHHHHHHHHHBCG
T ss_pred HHHHHHHHHCCCCCCCCHHHHHHHHHHCCC
T ss_conf 999976412038875322999999870592
No 30
>2b7v_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l2k_B
Probab=99.45 E-value=1.4e-13 Score=102.14 Aligned_cols=65 Identities=23% Similarity=0.258 Sum_probs=59.5
Q ss_pred CCCCHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCEEEEEEEECCEEEEEEEECCHHHHHHHHHHHHHHHC
Q ss_conf 13452588987532022333343101020778884599999999989999996898999999999999974
Q gi|254780940|r 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 (227)
Q Consensus 153 ~~~dpK~~Lqe~~q~~~~~~P~Y~~~~~~g~~~~~~f~v~v~v~g~~~g~g~g~SkK~Ae~~AA~~AL~kl 223 (227)
..+||++.|||+|+. |+|.++.++||+|++.|+|.|.|+|..+ +|.|+|||+||++||+.||+.|
T Consensus 2 ~~Knpv~~L~E~~~~-----~~y~~~~~~G~~h~~~F~~~v~v~~~~~-~g~G~SKK~Ak~~AA~~aL~~L 66 (71)
T 2b7v_A 2 SGKNPVMILNELRPG-----LKYDFLSESGESHAKSFVMSVVVDGQFF-EGSGRNKKLAKARAAQSALATV 66 (71)
T ss_dssp CSSCHHHHHHHHCCS-----CEEEEEECCCCTTTCCEEEEEECSSCEE-EEEESSHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCC-----CEEEEEEEECCCCCCCEEEEEEECCEEE-EECCCCHHHHHHHHHHHHHHHH
T ss_conf 897989999996669-----9799826288999974999999957998-8068989999999999999998
No 31
>2dmy_A Spermatid perinuclear RNA-binding protein; DSRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=99.40 E-value=1.5e-12 Score=95.88 Aligned_cols=68 Identities=29% Similarity=0.340 Sum_probs=60.5
Q ss_pred CCCCHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCEEEEEEEECCEEEEEEEECCHHHHHHHHHHHHHHHCCCC
Q ss_conf 13452588987532022333343101020778884599999999989999996898999999999999974889
Q gi|254780940|r 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 (227)
Q Consensus 153 ~~~dpK~~Lqe~~q~~~~~~P~Y~~~~~~g~~~~~~f~v~v~v~g~~~g~g~g~SkK~Ae~~AA~~AL~klgi~ 226 (227)
...||+.+|+|+ ...|+|+++.++||+|++.|+|.|.++|..+ +|.|+|||+||++||+.||++|+.-
T Consensus 17 ~~~np~~~L~el-----~~~~~Y~~~~~~G~~h~~~F~~~v~v~~~~~-~g~G~SKK~Aeq~AA~~aL~~L~~~ 84 (97)
T 2dmy_A 17 DLMNALMRLNQI-----RPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAMGYP 84 (97)
T ss_dssp SCTHHHHHHHHH-----SCSCCCEEEEEESCSSSCEEEEEEEETTEEE-EEEESSHHHHHHHHHHHHHHHHTCC
T ss_pred CCCCHHHHHHHC-----CCCCEEEEEEEECCCCCCEEEEEEEECCEEE-ECCCCCHHHHHHHHHHHHHHHHCCC
T ss_conf 734999999853-----7898799977278998961999999999998-6278979999999999999994899
No 32
>2l33_A Interleukin enhancer-binding factor 3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, DRBM; NMR {Homo sapiens}
Probab=99.37 E-value=1.7e-12 Score=95.51 Aligned_cols=68 Identities=29% Similarity=0.378 Sum_probs=60.4
Q ss_pred CCCCCCHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCEEEEEEEECCEEEEEEEECCHHHHHHHHHHHHHHHCC
Q ss_conf 00134525889875320223333431010207788845999999999899999968989999999999999748
Q gi|254780940|r 151 GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 (227)
Q Consensus 151 ~~~~~dpK~~Lqe~~q~~~~~~P~Y~~~~~~g~~~~~~f~v~v~v~g~~~g~g~g~SkK~Ae~~AA~~AL~klg 224 (227)
....+||++.|+|+. ..|+|+++.++||+|.+.|+|.|.|+|..+ +|.|+|||+||+.||+.||+.|-
T Consensus 13 ~~~~Knpv~~L~E~~-----~~~~Y~~~~~~G~~h~p~F~~~v~v~~~~~-~g~G~SKK~Aeq~AA~~aL~~L~ 80 (91)
T 2l33_A 13 TKHGKNPVMELNEKR-----RGLKYELISETGGSHDKRFVMEVEVDGQKF-QGAGSNKKVAKAYAALAALEKLF 80 (91)
T ss_dssp CSSTTCHHHHHHHHC-----SSCEEEEEEEEECSSCEEEEEEEEETTEEE-EEEESSHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHC-----CCCEEEEEEEECCCCCCEEEEEEEECCEEE-EECCCCHHHHHHHHHHHHHHHHH
T ss_conf 789989999999836-----599799987488988864999999999998-83589999999999999999986
No 33
>1qu6_A Protein kinase PKR; dsRNA-binding domain, solution structure, transferase; NMR {Homo sapiens} SCOP: d.50.1.1 d.50.1.1
Probab=99.33 E-value=1.5e-12 Score=95.93 Aligned_cols=71 Identities=30% Similarity=0.277 Sum_probs=65.0
Q ss_pred CCCCHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCEEEEEEEECCEEEEEEEECCHHHHHHHHHHHHHHHCC
Q ss_conf 134525889875320223333431010207788845999999999899999968989999999999999748
Q gi|254780940|r 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 (227)
Q Consensus 153 ~~~dpK~~Lqe~~q~~~~~~P~Y~~~~~~g~~~~~~f~v~v~v~g~~~g~g~g~SkK~Ae~~AA~~AL~klg 224 (227)
...+||+.||||||+.+.. |.|.++.++||+|+++|+|.|.|+|..+++|.|+|||+|++.||+.||+.|.
T Consensus 11 ~~~~~~~~LqE~~qk~~~~-~~y~~~~~~Gp~H~~~F~~~v~v~g~~~~~g~g~sKK~Ak~~AA~~aL~~L~ 81 (179)
T 1qu6_A 11 SAGFFMEELNTYRQKQGVV-LKYQELPNSGPPHDRRFTFQVIIDGREFPEGEGRSKKEAKNAAAKLAVEILN 81 (179)
T ss_dssp SSCSHHHHHHHHHHHHTCC-CEEEEEESCBTTTBCCEEEEEESSSSCCCEEECCSSHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHCCCC-CEEEEEEEECCCCCCCEEEEEEECCEEEEEECCCHHHHHHHHHHHHHHHHHH
T ss_conf 9768899999999856989-7199986358987880999999999997787472466999999999999987
No 34
>2b7t_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l3c_A
Probab=99.29 E-value=5.1e-12 Score=92.59 Aligned_cols=67 Identities=25% Similarity=0.312 Sum_probs=57.1
Q ss_pred CCHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCEEEEEEEECCEEEEEEEECCHHHHHHHHHHHHHHHCC
Q ss_conf 4525889875320223333431010207788845999999999899999968989999999999999748
Q gi|254780940|r 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 (227)
Q Consensus 155 ~dpK~~Lqe~~q~~~~~~P~Y~~~~~~g~~~~~~f~v~v~v~g~~~g~g~g~SkK~Ae~~AA~~AL~klg 224 (227)
.+||+.|+++.+. ...|+|++++++||+|++.|+|.|.|+|..+ +|.|+|||+||+.||+.||+.|.
T Consensus 4 ~~PK~~l~~L~e~--~~~~~y~~~~~~G~~h~~~F~~~v~v~g~~~-~g~G~SKK~Ae~~AA~~aL~~l~ 70 (73)
T 2b7t_A 4 VLPKNALMQLNEI--KPGLQYMLLSQTGPVHAPLFVMSVEVNGQVF-EGSGPTKKKAKLHAAEKALRSFV 70 (73)
T ss_dssp SSSHHHHHHHHHH--CSCCEEEEEEEECSSSSCEEEEEEESSSSEE-EEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHC--CCCCEEEEEEEECCCCCCEEEEEEEECCEEE-ECCCCCHHHHHHHHHHHHHHHHH
T ss_conf 7972899999873--8998799987388998977999999999988-86999899999999999999997
No 35
>2qvw_A GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral twin, hydrolase; 3.00A {Giardia intestinalis} PDB: 2ffl_A
Probab=99.27 E-value=6e-12 Score=92.14 Aligned_cols=140 Identities=20% Similarity=0.287 Sum_probs=105.1
Q ss_pred HHHHHHHHCCCC--CCHHHHHHHCCCHHHCCC-----------------CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 899999836965--898999984246121266-----------------7665477887458688645478776410468
Q gi|254780940|r 6 YSTLEKRIGYAF--ANRSLLEKALTHSSISHS-----------------YQESYERLEFLGDRILGLLISTLLFNHFDSA 66 (227)
Q Consensus 6 ~~~l~~~lgy~f--~~~~ll~~A~th~S~~~~-----------------~~~~~erLEflGDavL~~~v~~~l~~~~p~~ 66 (227)
++-+||++-|.. .|+..-.++.|. |..-+ ...-||+||.|||+.|....+-+|..+.|.+
T Consensus 595 l~l~ek~lay~~s~~~~~~aa~~is~-slaipipsgtipflirllq~altp~vyqklellgdaflkcslalhlh~~hptl 673 (756)
T 2qvw_A 595 LALYEKILAYESSGGSKHIAAQTVSR-SLAVPIPSGTIPFLIRLLQIALTPHVYQKLELLGDAFLKCSLALHLHALHPTL 673 (756)
T ss_dssp HHHHHHHHSSCCCCSSHHHHHHHHHH-TTCSCCCSSCHHHHHHHHHHHHSTGGGHHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHH-CEEECCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
T ss_conf 99999998108889835788887654-24202688860899999998528899999998788998767887775049740
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCC
Q ss_conf 87899888888874433454543138772001036631237531333332669999999964155422001221025643
Q gi|254780940|r 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQR 146 (227)
Q Consensus 67 ~eG~lt~lr~~lV~n~~La~~a~~lgl~~~l~~~~~~~~~~~~~~~~ilad~fEA~iGAiy~d~G~~~~~~~i~~~~~~~ 146 (227)
.||.||++|...-+|..|..+.+++ +.-+.----+...+.....|+++|+|||+.+||.+.+|-+++..|+..+..++
T Consensus 674 tegaltrmrqsaesn~vlg~ltk~~--ps~v~evi~~~hp~iqpdskvygdtfe~ilaaillacgeeaa~~fvr~~vlp~ 751 (756)
T 2qvw_A 674 TEGALTRMRQSAETNSVLGRLTKRF--PSVVSEVIIESHPKIQPDSKVYGDTFEAILAAILLACGEEAAGAFVREHVLPQ 751 (756)
T ss_dssp CHHHHHHHHHHTTSHHHHHHHHHTS--CTHHHHHHHHHSTTCCTTCSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTGGG
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHC--CCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 1578999886311120787875307--70788887612899898751102169999999999712577888999752351
Q ss_pred CC
Q ss_conf 11
Q gi|254780940|r 147 AL 148 (227)
Q Consensus 147 ~~ 148 (227)
..
T Consensus 752 v~ 753 (756)
T 2qvw_A 752 VV 753 (756)
T ss_dssp CC
T ss_pred EE
T ss_conf 01
No 36
>2l3j_A Double-stranded RNA-specific editase 1; editing, dsRNA recognition, DSRBM, hydrolase-RNA complex; NMR {Rattus norvegicus}
Probab=99.22 E-value=4.5e-11 Score=86.80 Aligned_cols=68 Identities=22% Similarity=0.238 Sum_probs=59.8
Q ss_pred CCCCCCCHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCEEEEEEEECCEEEEEEEECCHHHHHHHHHHHHHHHC
Q ss_conf 00013452588987532022333343101020778884599999999989999996898999999999999974
Q gi|254780940|r 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 (227)
Q Consensus 150 ~~~~~~dpK~~Lqe~~q~~~~~~P~Y~~~~~~g~~~~~~f~v~v~v~g~~~g~g~g~SkK~Ae~~AA~~AL~kl 223 (227)
......+|++.|+|++|. +.|+++.++||+|.+.|+|.|.|+|... +|.|+|||.|++.||+.||++|
T Consensus 156 ~~~~~~~~~~~L~e~~~~-----~~y~~~~~~G~~h~~~F~~~v~v~~~~~-~G~G~sKK~Ak~~AA~~aL~~L 223 (236)
T 2l3j_A 156 PPPSGKNPVMILNELRPG-----LKYDFLSESGESHAKSFVMSVVVDGQFF-EGSGRNKKLAKARAAQSALATV 223 (236)
T ss_dssp CCCSSCCHHHHHHHHCCC-----EEEEEECCSSSSSSCCEEEEEEETTEEE-EEEESSHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHCCC-----CCEEEEECCCCCCCCEEEEEEEECCEEE-EEEECCHHHHHHHHHHHHHHHH
T ss_conf 775565555799976659-----8489955307999986999999999999-9982999999999999999995
No 37
>2yt4_A Protein DGCR8; DSRBD, RNA binding domain, RNA binding protein; 2.60A {Homo sapiens}
Probab=99.14 E-value=1.3e-10 Score=83.97 Aligned_cols=72 Identities=24% Similarity=0.282 Sum_probs=66.1
Q ss_pred CCCCCCCHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCEEEEEEEECCEEEEEEEECCHHHHHHHHHHHHHHHC
Q ss_conf 00013452588987532022333343101020778884599999999989999996898999999999999974
Q gi|254780940|r 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 (227)
Q Consensus 150 ~~~~~~dpK~~Lqe~~q~~~~~~P~Y~~~~~~g~~~~~~f~v~v~v~g~~~g~g~g~SkK~Ae~~AA~~AL~kl 223 (227)
++...+|||+.||||||+.+...|.|.++..+||+| .|.|.|.++|..+++|.|.|||+|++.||+.||+.|
T Consensus 17 ~n~~~K~p~s~LqE~~qk~~~~~P~Y~~~~~~g~~~--~F~~~V~i~g~~~~~g~g~skk~A~~~aA~~al~~l 88 (232)
T 2yt4_A 17 INPNGKSEVCILHEYMQRVLKVRPVYNFFECENPSE--PFGASVTIDGVTYGSGTASSKKLAKNKAARATLEIL 88 (232)
T ss_dssp ECCTTSCHHHHHHHHHHHTTCCCCEEEEEECSCTTS--CEEEEEEETTEEEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCC--CEEEEEEECCEEEECCCCCCHHHHHHHHHHHHHHHH
T ss_conf 588788988999999997499998589975779999--989999999999732788867999999999999986
No 38
>2l3j_A Double-stranded RNA-specific editase 1; editing, dsRNA recognition, DSRBM, hydrolase-RNA complex; NMR {Rattus norvegicus}
Probab=99.08 E-value=2.6e-10 Score=82.13 Aligned_cols=65 Identities=28% Similarity=0.376 Sum_probs=56.6
Q ss_pred CCCHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCEEEEEEEECCEEEEEEEECCHHHHHHHHHHHHHHHCC
Q ss_conf 34525889875320223333431010207788845999999999899999968989999999999999748
Q gi|254780940|r 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 (227)
Q Consensus 154 ~~dpK~~Lqe~~q~~~~~~P~Y~~~~~~g~~~~~~f~v~v~v~g~~~g~g~g~SkK~Ae~~AA~~AL~klg 224 (227)
.+||..+|+|+ ...+.|++++++||+|.++|+|.|.|+|+.+ +|.|.|||+|++.||+.||+.|.
T Consensus 6 pKn~~~~lnEl-----~~~~~y~~~~~~Gp~H~~~F~~~v~vn~~~~-~g~G~SKK~Ak~~AAe~aL~~l~ 70 (236)
T 2l3j_A 6 PKNALMQLNEI-----KPGLQYMLLSQTGPVHAPLFVMSVEVNGQVF-EGSGPTKKKAKLHAAEKALRSFV 70 (236)
T ss_dssp THHHHHHHHHH-----CSSCEEEEEEEESCTTSCEEEEEEEETTEEE-EEEESHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHC-----CCCCEEEEEEEECCCCCCEEEEEEEECCEEE-EECCCCHHHHHHHHHHHHHHHHH
T ss_conf 81999999856-----5898499966368898985999999999999-95578578889999999999986
No 39
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}
Probab=97.22 E-value=0.00038 Score=44.12 Aligned_cols=69 Identities=16% Similarity=0.019 Sum_probs=43.2
Q ss_pred CHHHHHHHHHHCCCCCCCCCCEEC--------------------------------CCCCCCCCEEEEEEEEC--C-EEE
Q ss_conf 525889875320223333431010--------------------------------20778884599999999--9-899
Q gi|254780940|r 156 DAKTELQEWAHAKFGVTPEYKVTF--------------------------------RSGPDHDPRFTVVVEIS--G-LAP 200 (227)
Q Consensus 156 dpK~~Lqe~~q~~~~~~P~Y~~~~--------------------------------~~g~~~~~~f~v~v~v~--g-~~~ 200 (227)
-|+..|-..|.+....-|.|-... +++|+-...|.|+|.|. + ..+
T Consensus 395 ~Pr~lL~~FC~qhrL~ep~f~~~~~~~k~~~~~~rs~~~~~~~~~~~~~~~~~~~~~e~~~~~~~f~C~vki~sk~q~l~ 474 (950)
T 3htx_A 395 LPREILGLFCHQHRLAEPILSSSTAPVKSLSDIFRSHKKLKVSGVDDANENLSRQKEDTPGLGHGFRCEVKIFTKSQDLV 474 (950)
T ss_dssp CHHHHHHHHHHTTTCCCCEEECCC--------------------------------------------CEEEEEETTEEE
T ss_pred CHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCEE
T ss_conf 83899999887751476644214666564443222000366545210244200257888787774378999731465405
Q ss_pred EEEE----ECCHHHHHHHHHHHHHHHCC
Q ss_conf 9999----68989999999999999748
Q gi|254780940|r 201 AQGM----DCSKRAAEQVAAAEVLKREG 224 (227)
Q Consensus 201 g~g~----g~SkK~Ae~~AA~~AL~klg 224 (227)
-+.. =+..-.|-|+|+-+||-=++
T Consensus 475 le~s~~~~y~k~~daiqnasLk~L~w~~ 502 (950)
T 3htx_A 475 LECSPRKFYEKENDAIQNASLKALLWFS 502 (950)
T ss_dssp EEECCSCCCSSHHHHHHHHHHHHHHHHH
T ss_pred EEECHHHHHHHCCHHHHHHHHHHHHHHH
T ss_conf 8856068655311778888999999998
No 40
>2db2_A KIAA0890 protein; DSRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.80 E-value=0.14 Score=28.38 Aligned_cols=68 Identities=21% Similarity=0.216 Sum_probs=42.5
Q ss_pred CCCHHHHHHHHHHCCCCC-----CCCCCEECCCCCCCCCEEEEEEEECCEEEEEEEECCHHHHHHHHHHHHHHHCC
Q ss_conf 345258898753202233-----33431010207788845999999999899999968989999999999999748
Q gi|254780940|r 154 RRDAKTELQEWAHAKFGV-----TPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 (227)
Q Consensus 154 ~~dpK~~Lqe~~q~~~~~-----~P~Y~~~~~~g~~~~~~f~v~v~v~g~~~g~g~g~SkK~Ae~~AA~~AL~klg 224 (227)
.-+||+.|...+|..... ...|+- .+|+.. +.-++.+......-.+|.|+-|.+||.+||..|.++++
T Consensus 16 FP~PK~LL~nVi~ra~~~S~~kd~l~y~~--t~g~~~-Kk~tLtl~WP~~me~ea~G~kKieAE~~AAAlAC~~lK 88 (119)
T 2db2_A 16 FPQPKNLLNSVIGRALGISHAKDKLVYVH--TNGPKK-KKVTLHIKWPKSVEVEGYGSKKIDAERQAAAAACQLFK 88 (119)
T ss_dssp CSCHHHHHHHHHHHHTTHHHHHHHEEEEE--CCSSSS-EEEEEEECSSSCEEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCCHHHHEEEEE--CCCCCE-EEEEEEEECCCCEEEEEECCHHHHHHHHHHHHHHHHHH
T ss_conf 89838899999999855553546257785--157844-77899981797589886152246777635589999987
No 41
>2kou_A Dicer-like protein 4; ATP-binding, endonuclease, helicase, hydrolase, nuclease, nucleotide-binding, nucleus, RNA- binding; NMR {Arabidopsis thaliana}
Probab=90.94 E-value=0.59 Score=24.51 Aligned_cols=69 Identities=12% Similarity=0.082 Sum_probs=45.0
Q ss_pred CCHHHHHHHHHHCCCC-----CCCCCCEECCCCCCCCCEEEEEEEECC-----EEEEEEEECCHHHHHHHHHHHH---HH
Q ss_conf 4525889875320223-----333431010207788845999999999-----8999999689899999999999---99
Q gi|254780940|r 155 RDAKTELQEWAHAKFG-----VTPEYKVTFRSGPDHDPRFTVVVEISG-----LAPAQGMDCSKRAAEQVAAAEV---LK 221 (227)
Q Consensus 155 ~dpK~~Lqe~~q~~~~-----~~P~Y~~~~~~g~~~~~~f~v~v~v~g-----~~~g~g~g~SkK~Ae~~AA~~A---L~ 221 (227)
.+..+.|+.||++--. ..|.|.+...+. .+.|.|.|.+.- ...|. .-.||+.|++.||-+| |.
T Consensus 4 ~sAv~ll~~yCs~Lp~d~f~~~~P~~~~~~~~~---~~~~~c~v~LP~~splr~i~g~-~~~sk~~AK~sAAf~Ac~~L~ 79 (102)
T 2kou_A 4 GSSISMMYKYCSRLPHDEFFQPKPEFQFKPVDE---FGGTICRITLPANAPISEIESS-LLPSTEAAKKDACLKAVHELH 79 (102)
T ss_dssp SHHHHHHHHHHTTSSSCTTCCSSCEEEEEECCG---GGCEEEEEECCTTCSSCCEEEE-EESSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHCCCCCCCCCCCCEEEEEEECC---CCCEEEEEECCCCCCCCEEECC-CCCCHHHHHHHHHHHHHHHHH
T ss_conf 039999999970489875566785499998568---8828999987899975768756-430089999999999999999
Q ss_pred HCCCCC
Q ss_conf 748899
Q gi|254780940|r 222 REGIWT 227 (227)
Q Consensus 222 klgi~t 227 (227)
++|.++
T Consensus 80 ~~G~Ld 85 (102)
T 2kou_A 80 NLGVLN 85 (102)
T ss_dssp HHCSCT
T ss_pred HCCCCC
T ss_conf 859987
No 42
>1ztd_A Hypothetical protein PFU-631545-001; structural genomics, southeast collaboratory for structural genomics, secsg; 2.00A {Pyrococcus furiosus} SCOP: a.149.1.2
Probab=82.44 E-value=2.4 Score=20.79 Aligned_cols=84 Identities=24% Similarity=0.246 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHHHHH--HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCHHHH
Q ss_conf 788745868864547877--641046887899888888874433454543138772001036631237531333332669
Q gi|254780940|r 42 RLEFLGDRILGLLISTLL--FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 (227)
Q Consensus 42 rLEflGDavL~~~v~~~l--~~~~p~~~eG~lt~lr~~lV~n~~La~~a~~lgl~~~l~~~~~~~~~~~~~~~~ilad~f 119 (227)
-|.-+||+.++|+++-.| |.-+|... -|-|.+|+---..-||...+. +....-.+|+.
T Consensus 14 ~Lak~GDSLiNF~~SlALse~lG~Ptg~----------rVPnasLaiale~a~L~~~~~----------r~dkh~kGd~a 73 (133)
T 1ztd_A 14 GLAKFGDSLINFLYSLALTEFLGKPTGD----------RVPNASLAIALELTGLSKNLR----------RVDKHAKGDYA 73 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSCCCC----------CCCHHHHHHHHHHHTGGGGCC----------GGGTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCC----------CCCCHHHHHHHHHHHHHHCCC----------CCCCCCCCHHH
T ss_conf 5888708999999999999992899878----------788749999999962764288----------75677861799
Q ss_pred HHHHHHHHHCCCCC--CCHHHHHCCCCC
Q ss_conf 99999996415542--200122102564
Q gi|254780940|r 120 ESLIAALYLDGGIE--VAGTFVDKYWKQ 145 (227)
Q Consensus 120 EA~iGAiy~d~G~~--~~~~~i~~~~~~ 145 (227)
||+++--|+.+-+. .+-.++...+.+
T Consensus 74 EA~iAyAWleG~is~eEavEil~~N~~~ 101 (133)
T 1ztd_A 74 EALIAKAWLMGLISEREAVEIIKKNLYP 101 (133)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHTTCCG
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHCCCH
T ss_conf 9999999980535199999999962746
No 43
>3bbn_E Ribosomal protein S5; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=37.06 E-value=18 Score=15.46 Aligned_cols=38 Identities=21% Similarity=0.181 Sum_probs=27.0
Q ss_pred CCEEEEEEEECCE----EEEEEEECCHHHHHHHHHHHHHHHC
Q ss_conf 8459999999998----9999996898999999999999974
Q gi|254780940|r 186 DPRFTVVVEISGL----APAQGMDCSKRAAEQVAAAEVLKRE 223 (227)
Q Consensus 186 ~~~f~v~v~v~g~----~~g~g~g~SkK~Ae~~AA~~AL~kl 223 (227)
...|.+-|.+++. -+|.|.|..-..|-++|..+|.++|
T Consensus 171 ~~sFrALVVVGNgnG~VG~G~GKA~EV~~AIrKA~~~AKkNL 212 (308)
T 3bbn_E 171 HMRFRAIVVVGDKKGQVGVGVGKAKEVVSAVQKAAVDARRNI 212 (308)
T ss_dssp EECCEEEEEEECSSSEEEEEEEECSSHHHHHHHHHHTTTTSC
T ss_pred CEEEEEEEEEECCCCCEEEEEEECCCHHHHHHHHHHHHHHCE
T ss_conf 157899999957999686787715668999999999997148
No 44
>2dae_A KIAA0733 protein; mitogen-activated protein kinase kinase kinase 7 interacting protein 2, MAP3K7IP2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.31 E-value=28 Score=14.18 Aligned_cols=36 Identities=11% Similarity=0.062 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 86454787764104688789988888887443345454
Q gi|254780940|r 51 LGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVA 88 (227)
Q Consensus 51 L~~~v~~~l~~~~p~~~eG~lt~lr~~lV~n~~La~~a 88 (227)
+++-|-+.|-.+||+.+++..++--.+ +|.+|...+
T Consensus 9 ~d~qvlh~LrqrFPEiPe~VVs~cmlQ--N~nNleaCc 44 (75)
T 2dae_A 9 IDFQVLHDLRQKFPEVPEVVVSRCMLQ--NNNNLDACC 44 (75)
T ss_dssp CCHHHHHHHHHHSSSSCHHHHHHHHTT--TTSCSHHHH
T ss_pred CCHHHHHHHHHHCCCCCHHHHHHHHHH--CCCCHHHHH
T ss_conf 219999999986667649999999998--288699999
No 45
>3iwf_A Transcription regulator RPIR family; transcriptional, N-terminal, domain, PSI, MCSG, structural genomics; 1.40A {Staphylococcus epidermidis atcc 12228}
Probab=26.16 E-value=14 Score=16.12 Aligned_cols=41 Identities=12% Similarity=0.206 Sum_probs=29.7
Q ss_pred HHHHHHHH---CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEE
Q ss_conf 47877641---04688789988888887443345454313877200
Q gi|254780940|r 55 ISTLLFNH---FDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 (227)
Q Consensus 55 v~~~l~~~---~p~~~eG~lt~lr~~lV~n~~La~~a~~lgl~~~l 97 (227)
|++|+..+ .+.++-.+++ +..-||..++.+.|+++|+..|-
T Consensus 22 Ia~yil~~~~~i~~~si~elA--~~~~VS~aTi~Rf~kklGf~gf~ 65 (107)
T 3iwf_A 22 IAQFILNYPHKVVNMTSQEIA--NQLETSSTSIIRLSKKVTPGGFN 65 (107)
T ss_dssp HHHHHHHCHHHHTTCCHHHHH--HHHTSCHHHHHHHHHHHSTTHHH
T ss_pred HHHHHHHCHHHHHHCCHHHHH--HHHCCCHHHHHHHHHHHCCCCHH
T ss_conf 999999599999776599999--89798998999999995889899
No 46
>2hze_A Glutaredoxin-1; thioredoxin fold, arsenic, dimethylarsenite., electron transport, oxidoreductase; 1.80A {Ectromelia virus moscow} PDB: 2hzf_A 2hze_B
Probab=24.39 E-value=17 Score=15.48 Aligned_cols=34 Identities=9% Similarity=0.013 Sum_probs=19.7
Q ss_pred EEEECCEEEEEEEECCHHHHHHHHHHHHHHHCCCC
Q ss_conf 99999989999996898999999999999974889
Q gi|254780940|r 192 VVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 (227)
Q Consensus 192 ~v~v~g~~~g~g~g~SkK~Ae~~AA~~AL~klgi~ 226 (227)
.|+++|+.+|- ...-.+..+...=++.|++.|++
T Consensus 78 qIfi~G~~IGG-~ddl~~l~~~g~L~~lL~~~G~l 111 (114)
T 2hze_A 78 RIFFGKTSIGG-YSDLLEIDNMDALGDILSSIGVL 111 (114)
T ss_dssp EEEETTEEEES-HHHHHHHHHTTCHHHHHHHTTCB
T ss_pred EEEECCEEEEC-HHHHHHHHHCCCHHHHHHHCCCC
T ss_conf 68899979806-79999999888799999876884
No 47
>2zkq_e 40S ribosomal protein S2E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=21.29 E-value=36 Score=13.53 Aligned_cols=37 Identities=16% Similarity=-0.012 Sum_probs=20.0
Q ss_pred CEEEEEEEECC---E-EEEEEEECCHHHHHHHHHHHHHHHC
Q ss_conf 45999999999---8-9999996898999999999999974
Q gi|254780940|r 187 PRFTVVVEISG---L-APAQGMDCSKRAAEQVAAAEVLKRE 223 (227)
Q Consensus 187 ~~f~v~v~v~g---~-~~g~g~g~SkK~Ae~~AA~~AL~kl 223 (227)
..|.+-|.+++ . -+|.|.+..-..|-++|..+|-++|
T Consensus 30 ~~f~alVvVGn~nG~vG~G~GKa~ev~~Ai~KA~~~Ak~nl 70 (179)
T 2zkq_e 30 TRFKAFVAIGDHNGHVGLGVKCSKEVATAIRGAIILAKLSI 70 (179)
T ss_dssp CCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHHHHSE
T ss_pred EEEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCEEE
T ss_conf 78999999956987674331105757899998887653469
No 48
>2o3f_A Putative HTH-type transcriptional regulator YBBH; APC85504, putative transcriptional regulator YBBH; HET: MLY; 1.75A {Bacillus subtilis} SCOP: a.4.1.20
Probab=21.06 E-value=36 Score=13.50 Aligned_cols=41 Identities=17% Similarity=0.217 Sum_probs=29.2
Q ss_pred HHHHHHHH---CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEE
Q ss_conf 47877641---04688789988888887443345454313877200
Q gi|254780940|r 55 ISTLLFNH---FDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 (227)
Q Consensus 55 v~~~l~~~---~p~~~eG~lt~lr~~lV~n~~La~~a~~lgl~~~l 97 (227)
|++|+.++ .+.++-.+++ +..-||..++.+.|+++|+..|-
T Consensus 26 Ia~yil~n~~~v~~~si~elA--~~~~vS~aTI~Rf~kklGf~gf~ 69 (111)
T 2o3f_A 26 LADYILAHPHXAIESTVNEIS--ALANSSDAAVIRLCXSLGLKGFQ 69 (111)
T ss_dssp HHHHHHHCHHHHHTCCHHHHH--HHTTCCHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHCHHHHHHCCHHHHH--HHHCCCHHHHHHHHHHHCCCCHH
T ss_conf 999999592476437899999--89798987999999992779899
Done!