HHSEARCH alignment of GI: 254780940 and SCOP domain: d1o0wa1

Alignment
>d1o0wa1 a.149.1.1 (A:-1-167) RNase III endonuclease catalytic domain {Thermotoga maritima [TaxId: 2336]}
Probab=100.00  E-value=2.9e-41  Score=271.07  Aligned_cols=147  Identities=32%  Similarity=0.450  Sum_probs=135.2

Q ss_pred             CCHHHHHHHHCCCCCCHHHHHHHCCCHHHCC-------CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf             5889999983696589899998424612126-------676654778874586886454787764104688789988888
Q gi|254780940|r    4 LRYSTLEKRIGYAFANRSLLEKALTHSSISH-------SYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN   76 (227)
Q Consensus         4 ~~~~~l~~~lgy~f~~~~ll~~A~th~S~~~-------~~~~~~erLEflGDavL~~~v~~~l~~~~p~~~eG~lt~lr~   76 (227)
                      ..++.||++|||+|+|++||.+||||+||..       ...++||||||||||||+++++++||.+||+.+||.+|.+|+
T Consensus         9 ~~~~~~e~~lgy~F~n~~Ll~~AlTH~S~~~~~~~~~~~~~~~nerLefLGDavL~~~v~~~l~~~~~~~~~g~ls~~~~   88 (169)
T d1o0wa1           9 KIVEEFQKETGINFKNEELLFRALCHSSYANEQNQAGRKDVESNEKLEFLGDAVLELFVCEILYKKYPEAEVGDLARVKS   88 (169)
T ss_dssp             HHHHHHHHHHCCCCSSHHHHHHHHBCHHHHHHHHHTTCTTCCCSHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf             99999999989863988999987668153654433233565321889999877999998999998641002001278999


Q ss_pred             HHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCCCCC
Q ss_conf             88744334545431387720010366312375313333326699999999641554220012210256431110
Q gi|254780940|r   77 SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKS  150 (227)
Q Consensus        77 ~lV~n~~La~~a~~lgl~~~l~~~~~~~~~~~~~~~~ilad~fEA~iGAiy~d~G~~~~~~~i~~~~~~~~~~~  150 (227)
                      .+|||++|+.+|..+||+++++++++........+++++||+|||+|||||+|+|++.|+.|+.++|.+.+...
T Consensus        89 ~lv~~~~La~ia~~~~l~~~i~~~~~~~~~~~~~~~kvlad~~EAliGAiylD~G~~~~~~~i~~~~~~~l~~i  162 (169)
T d1o0wa1          89 AAASEEVLAMVSRKMNLGKFLFLGKGEEKTGGRDRDSILADAFEALLAAIYLDQGYEKIKELFEQEFEFYIEKI  162 (169)
T ss_dssp             HHTSHHHHHHHHHHTTHHHHCBCCHHHHHTTGGGCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCHHHHHHCCCHHHHCCCCCCCCHHCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
T ss_conf             87418999999998181766424872654388665531220999999999993779999999999999999986


SCOP domain information

class: All alpha proteins
fold: RNase III domain-like
superfamily: RNase III domain-like
family: RNase III catalytic domain-like
domain: RNase III endonuclease catalytic domain
species: Thermotoga maritima [TaxId: 2336]