HHSEARCH alignment of GI: 254780940 and SCOP domain: d1qu6a2

Alignment

Probab=99.57  E-value=1.9e-15  Score=112.20  Aligned_cols=75  Identities=19%  Similarity=0.088  Sum_probs=65.7

Q ss_pred             CCCCCCCCCHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCEEEEEEEECCEEEEEEEECCHHHHHHHHHHHHHHHCC
Q ss_conf             11000134525889875320223333431010207788845999999999899999968989999999999999748
Q gi|254780940|r  148 LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG  224 (227)
Q Consensus       148 ~~~~~~~~dpK~~Lqe~~q~~~~~~P~Y~~~~~~g~~~~~~f~v~v~v~g~~~g~g~g~SkK~Ae~~AA~~AL~klg  224 (227)
                      ........|||++||||||+++. .|.|... ++||+|++.|.|.|.|+|..++.|.|+|||+||+.||+.||++|.
T Consensus         7 ~~~~~~~~n~~s~L~E~~Qk~~~-~~~y~~~-~~g~~h~~~F~~~v~i~g~~~~~g~G~sKK~Akq~AA~~Al~~L~   81 (89)
T d1qu6a2           7 SSEGLSMGNYIGLINRIAQKKRL-TVNYEQC-ASGVHGPEGFHYKCKMGQKEYSIGTGSTKQEAKQLAAKLAYLQIL   81 (89)
T ss_dssp             SSCCCCCCCCHHHHHHHHHHSCC-EEEEEEE-EECSSSSSEEEEEEEEETTBCCEEEESSHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCHHHHHHHHHHHCCC-CCCEEEE-CCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             77676532899999999996288-7642663-157878875699999897036665652699999999999999997

SCOP domain information

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-dependent protein kinase pkr
species: Human (Homo sapiens) [TaxId: 9606]