HHSEARCH alignment of GI: 254780940 and SCOP domain: d1x48a1

Alignment

Probab=99.54  E-value=7.7e-15  Score=108.48  Aligned_cols=66  Identities=20%  Similarity=0.204  Sum_probs=59.7

Q ss_pred             HHHHHHHHHHCCCCCCCCCCEECCCCCCCCCEEEEEEEECCEEEEEEEECCHHHHHHHHHHHHHHHCC
Q ss_conf             25889875320223333431010207788845999999999899999968989999999999999748
Q gi|254780940|r  157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG  224 (227)
Q Consensus       157 pK~~Lqe~~q~~~~~~P~Y~~~~~~g~~~~~~f~v~v~v~g~~~g~g~g~SkK~Ae~~AA~~AL~klg  224 (227)
                      |+++||||||++.. ++.|.+. ++||+|++.|+|.|.|+|..+++|.|+|||+||+.||+.||++|.
T Consensus         1 Y~s~L~E~~Qk~~~-~~~~~~~-~~G~~h~~~F~~~v~v~~~~~~~g~G~sKK~Aeq~AA~~Al~~L~   66 (76)
T d1x48a1           1 YIGLVNSFAQKKKL-SVNYEQC-EPNSELPQRFICKCKIGQTMYGTGSGVTKQEAKQLAAKEAYQKLL   66 (76)
T ss_dssp             HHHHHHHHHHHTTC-CEEEEEC-CCSSSSSCCEEEEEEESSCEEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHCC-CCCCCCC-CCCCCCCCCEEEEEEECCEEECCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             94899999998689-9764447-769899975899999999995785762799999999999999997

SCOP domain information

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-dependent protein kinase pkr
species: Mouse (Mus musculus) [TaxId: 10090]